View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17058_low_2 (Length: 381)
Name: NF17058_low_2
Description: NF17058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17058_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 369
Target Start/End: Complemental strand, 12051932 - 12051572
Alignment:
| Q |
7 |
tccaagaatattttctaatgatgaacgttctggttgatcttgagccaggaggattaattggttttgacatcttaagtgcatgannnnnnnnnctgtttgt |
106 |
Q |
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| T |
12051932 |
tccaataatattttctaatgatgaacgttctggttgatcttgagccaggaagattaattggtttagagatcttaattgcatgatttttttt--tgtttgt |
12051835 |
T |
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| Q |
107 |
gaataagatgcatttatatttatgttatcaaaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttct |
206 |
Q |
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| T |
12051834 |
gaataagatgcatttatatttatgttatcgaaaacaagcatgcttaattctgaaatgttggttggaagaaggatagtttcttcatagcatcattttttct |
12051735 |
T |
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| Q |
207 |
cttgctcctgcattttcagaattttaatgtctttgtattatatgtctaagtttttctttggctcttttatttcttgataaaaactataacgtgcagatat |
306 |
Q |
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| T |
12051734 |
tttgctcctgcattttctgaattttaatgtctttgtattatatgtccaagtttttctttggctcttttatttcttgataataactataacgtgcagatat |
12051635 |
T |
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| Q |
307 |
ttttagcttctccatctaccggaaataaagtcggagaatttcgtgttctttaatggttgatat |
369 |
Q |
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| T |
12051634 |
ttttagcttctccaactgcctgaaggaaagtcgtagaatttcgtgttctttaatggttgatat |
12051572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 12030805 - 12030451
Alignment:
| Q |
7 |
tccaagaatattttctaatgatgaacgttctggttgatcttgagccaggaggattaattggttttgacatcttaagtgcatgannnnnnnnnctgtttgt |
106 |
Q |
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| T |
12030805 |
tccaataatgttttctaatgatgaacgttctggttgatcttgagacaagaggattaattggtttagagattttaagtgcaagattattttt--tgtttgt |
12030708 |
T |
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| Q |
107 |
gaataagatgcatttatatttatgttatcaaaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttct |
206 |
Q |
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| T |
12030707 |
gaataagatgcatttatatttatgttatcaaaaacaagcatgcttaattctgaaatgttggttggaagaaagatagtttcttcatagcatcattttttct |
12030608 |
T |
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| Q |
207 |
cttgctcctgcattttcagaattttaatgtctttgtattatatgtctaagtttttctttggctcttttatttcttgataaaaactataacgtgcagatat |
306 |
Q |
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| T |
12030607 |
cttgctcctgcattttctgaattttaatttctttgtattatatgtctaagtttttctttagctcttttatttcttgataataactataacgtgcagatat |
12030508 |
T |
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| Q |
307 |
ttttagcttctccatctaccggaaataaagtcggagaatttcgtgttctttaatggt |
363 |
Q |
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| T |
12030507 |
ttttagcttctccaactgcctgaaagaaagtcgttgaatttcgtgttctttaatggt |
12030451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 135 - 308
Target Start/End: Original strand, 19146414 - 19146587
Alignment:
| Q |
135 |
caaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcattttttctcttgctcctgcattttcagaattttaa |
233 |
Q |
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|||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |
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| T |
19146414 |
caaaaacatgcatgcttaattctgaaatgttttgttggaagaaggatagtttcttcatagcatcaattttt-tcttgctcttgcattttttgaattttaa |
19146512 |
T |
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| Q |
234 |
tgtctttgtattatatgtctaagtttttctttggctcttttatttcttgataaaaactataacgtgcagatattt |
308 |
Q |
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| T |
19146513 |
tttctttttattatatgtctaagtttgtttttggctcttttatttcttgataataactataaagtgcaaatattt |
19146587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 19125423 - 19125608
Alignment:
| Q |
135 |
caaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcattttttctcttgctcctgcattttcagaattttaa |
233 |
Q |
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|||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||| |
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| T |
19125423 |
caaaaacatgcatgctttattctgaaatgttttgttggaagaaggatagtttcttcatagcatcaattttt-tcttgctcttgcatattttgaattttaa |
19125521 |
T |
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| Q |
234 |
tgtctttgtattatatgtctaagtttttctttggctcttttatttcttgataaaaactataacgtgcagatatttttagcttctcca |
320 |
Q |
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| T |
19125522 |
tttctatttattatatgtctaagtttgtctttggctcttttatttcttgataataactataaaatgcaaatatttttagcttttcca |
19125608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 137 - 348
Target Start/End: Original strand, 19119133 - 19119342
Alignment:
| Q |
137 |
aaaacaagcatgcttaattctcaaatgttggttggaagaaggatagtttcttcatagcatcattttttctcttgctcctgcattttcagaattttaatgt |
236 |
Q |
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||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| | ||||||| || | | |||||||||||||||||||| |
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| T |
19119133 |
aaaacaagcatgcctaattctgaaatgtttgttggaagaaggacggtttcttcatagcatgaatttttct--tgatgttacattttcagaattttaatgt |
19119230 |
T |
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| Q |
237 |
ctttgtattatatgtctaagtttttctttggctcttttatttcttgataaaaactataacgtgcagatatttttagcttctccatctaccggaaataaag |
336 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| || | ||||||| |||| || || |||| |||| |
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| T |
19119231 |
ctttttattatatgtctaagtttttctttggctcttttatttcttgataataactatgaagtgcaaatttatttagctattccaactgcctgaaagaaag |
19119330 |
T |
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| Q |
337 |
tcggagaatttc |
348 |
Q |
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| T |
19119331 |
tcagggaatttc |
19119342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 282
Target Start/End: Original strand, 15979051 - 15979196
Alignment:
| Q |
136 |
aaaaacaagcatgcttaattctcaaatgttg-gttggaagaaggatagtttcttcatagcatcattttttctcttgctcctgcattttcagaattttaat |
234 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| ||| |
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| T |
15979051 |
aaaaacaagcatgcttaattctgaaatgttttgttggaagaaggatagtttcttcatagcataattttt--tcttgctcttgcattttttaaatttgaat |
15979148 |
T |
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| Q |
235 |
gtctttgtattatatgtctaagtttttctttggctcttttatttcttg |
282 |
Q |
| |
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|| || ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
15979149 |
ttcattttattatatgtctatgtttgcctttggctcttttatttcttg |
15979196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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