View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17058_low_3 (Length: 324)
Name: NF17058_low_3
Description: NF17058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17058_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 11889089 - 11889382
Alignment:
| Q |
14 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
113 |
Q |
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| T |
11889089 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcagatgaatacaatagaaagacaactgcaatagac |
11889188 |
T |
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| Q |
114 |
tggtgttagatttgaatgcctggactaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaa-ttttttgtatcatct |
212 |
Q |
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| T |
11889189 |
tggtgttagatttgaatgcctggactaaagtatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatttttttgtatcatct |
11889288 |
T |
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| Q |
213 |
atgtataggccattcagtagaaccatgttattgtcatatataaatactagaagnnnnnnnnttcagtagaccaccttggtagaaggtcgactgt |
306 |
Q |
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| T |
11889289 |
atgcataggccattcagtagaaccatgttattgtcatatataaatactagaagaaaaaaaattcagtagaccaccttgatagaaggtcgactgt |
11889382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 11895576 - 11895800
Alignment:
| Q |
14 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
107 |
Q |
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| T |
11895576 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11895674 |
T |
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| Q |
108 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
199 |
Q |
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| T |
11895675 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11895774 |
T |
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| Q |
200 |
ttttgtatcatctatgtataggccattc |
227 |
Q |
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| T |
11895775 |
ttt--tatcatctatgtctaggccattc |
11895800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 11901242 - 11901466
Alignment:
| Q |
14 |
gatgaaaaccttcacaaagagtttacaatatttgtggattaccattggaatttgatataatgaatcaga-tgaata-----caatagaaagacaactgca |
107 |
Q |
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| T |
11901242 |
gatgaaaaccttcacaaagagttaacaatgat-gtggattagcatagcaaattgatataattaatcaccgtgaatataatacaatagaaagacaattgca |
11901340 |
T |
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| Q |
108 |
atagactggtgttagatttgaatgcctgga--------ctaaagtatagacatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
199 |
Q |
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||| ||||||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901341 |
ataaactggtgttagattttaatgcctggagccctgaactaatgcatagaaatttcataaagtacaattcaatgactatagacctttatatggtttaatt |
11901440 |
T |
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| Q |
200 |
ttttgtatcatctatgtataggccattc |
227 |
Q |
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||| |||||||||||| |||||||||| |
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| T |
11901441 |
ttt--tatcatctatgtctaggccattc |
11901466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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