View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17059_high_13 (Length: 250)
Name: NF17059_high_13
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13336192 - 13335953
Alignment:
| Q |
1 |
aacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13336192 |
aacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgaga |
13336093 |
T |
|
| Q |
101 |
caatatttgaaaaatcattgaaagtatcgttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaacaaagtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13336092 |
aaatatttgaaaaatcattgaaagtatcgttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaacaaagtc |
13335993 |
T |
|
| Q |
201 |
catgaacaatagtgcaactctttgttgacaatggcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13335992 |
catgaacaatagtgcaactctttgttgacaatggcctatg |
13335953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13339530 - 13339284
Alignment:
| Q |
1 |
aacaccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattctaacgaggataatgttgaga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13339530 |
aacaccaaaatcttgatgtttcttttgtaaacgatcaaccatatacatacaagaagggagtgtgatatttgggaatattataacgaggataatgttgaga |
13339431 |
T |
|
| Q |
101 |
caatatttgaaaaatcattgaaagtatcg-------ttgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339430 |
aaatatttgaaaaatcattgaaagtattgttgccaattgccattgcaaaatgattgacctttaaatttaaattttactgctaatcataatcactctaaaa |
13339331 |
T |
|
| Q |
194 |
caaagtccatgaacaatagtgcaactctttgttgacaatggcctatg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339330 |
caaagtccatgaacaatagtgcaactctttgttgacaatggcctatg |
13339284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 13345330 - 13345184
Alignment:
| Q |
5 |
ccaaaatcttgatgtctcttttgtaaacgatcaaccatatacatacaagaagggag-tgtgatatttgggaatattctaacgaggataatgttgagacaa |
103 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
13345330 |
ccaaaatcttcatgtctcttttgtaaaccatcagccatatacatacaagaaggggggtgtaatatttgggaatattccaacgaggataatgttgagaaaa |
13345231 |
T |
|
| Q |
104 |
tatttgaaaaatcattgaaagtatc-gttgccattgcaaaatgattg |
149 |
Q |
| |
|
|||||| || ||| ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
13345230 |
tatttgcaatatcgttgaaagtatcggttaccattgcaaaatgattg |
13345184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University