View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17059_high_14 (Length: 250)

Name: NF17059_high_14
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17059_high_14
NF17059_high_14
[»] chr4 (7 HSPs)
chr4 (16-232)||(33832297-33832513)
chr4 (16-232)||(37919266-37919482)
chr4 (16-120)||(7567574-7567678)
chr4 (15-126)||(22505206-22505317)
chr4 (16-126)||(46596260-46596370)
chr4 (16-125)||(37074469-37074578)
chr4 (26-126)||(50960195-50960295)
[»] chr8 (2 HSPs)
chr8 (16-232)||(36998371-36998587)
chr8 (16-126)||(43734427-43734537)
[»] chr6 (2 HSPs)
chr6 (15-137)||(13327795-13327917)
chr6 (132-235)||(13327413-13327516)
[»] chr7 (7 HSPs)
chr7 (16-126)||(6998221-6998331)
chr7 (16-120)||(8983702-8983806)
chr7 (16-126)||(44265855-44265965)
chr7 (16-125)||(37980340-37980449)
chr7 (24-125)||(42359809-42359910)
chr7 (16-126)||(7926731-7926841)
chr7 (16-125)||(45186907-45187016)
[»] chr3 (2 HSPs)
chr3 (16-125)||(36498230-36498339)
chr3 (172-232)||(35002405-35002465)
[»] chr2 (1 HSPs)
chr2 (16-126)||(38503743-38503853)
[»] chr5 (2 HSPs)
chr5 (15-129)||(11076015-11076129)
chr5 (16-104)||(21292522-21292609)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 33832297 - 33832513
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  33832297 attcatcatcgtttgggtcatccaagtttagataagttgaaagtgttggttccacaactctcacatttaaagtctcttgattgtgagtcgtgtcagcttg 33832396  T
Q  116 gcaaacatgttcggacatctcttcacaacaagacaaataaaagatccaaacatgcttttgatattgtccattctgatatttggggtcctattcatgtgcc 215  Q
    |||||||||||| ||||||| ||||||| |     |||||||||||||| ||||| || |||||||| ||||||||||||||||||||||  || || ||    
T  33832397 gcaaacatgttcagacatcttttcacaatagtgtcaataaaagatccaagcatgccttcgatattgtgcattctgatatttggggtcctagccacgttcc 33832496  T
Q  216 ctctaatttaggataca 232  Q
    |||||||||||||||||    
T  33832497 ctctaatttaggataca 33832513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 37919482 - 37919266
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||| |||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  37919482 attcaacatcgtttgggtcatccaagtttagataagttgaaagtgttggttccacaactctcacatttaaagtctcttgattgtgagtcgtgtcagcttg 37919383  T
Q  116 gcaaacatgttcggacatctcttcacaacaagacaaataaaagatccaaacatgcttttgatattgtccattctgatatttggggtcctattcatgtgcc 215  Q
    |||||||||||| ||||||| ||||||| |     ||||||||||| || ||||| || |||||||| ||||||||||||||||||| ||  |  || |     
T  37919382 gcaaacatgttcagacatcttttcacaatagtgtcaataaaagatcgaagcatgccttcgatattgtgcattctgatatttggggtcgtagccgcgttct 37919283  T
Q  216 ctctaatttaggataca 232  Q
    |||||||||||||||||    
T  37919282 ctctaatttaggataca 37919266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 7567678 - 7567574
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||| | | | ||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||| |||    
T  7567678 attcatcgtcgtttgggtcatccaaatatgggtaagtcaaaagtgtttgttcctcaactgtcacattttatgtctcttgattgtgagtcgtgttagattg 7567579  T
Q  116 gcaaa 120  Q
    |||||    
T  7567578 gcaaa 7567574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 22505317 - 22505206
Alignment:
Q  15 tattcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagctt 114  Q
    |||||||| |||||| |||||||| ||| | ||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||||||||||||| | |||    
T  22505317 tattcatcgtcgtttgggtcatcctagttttgataagttaaaggtgttggttcctcaactttcacatttgaagtcattggattgtgagtcatgtcaactt 22505218  T
Q  115 ggcaaacatgtt 126  Q
    ||||| ||||||    
T  22505217 ggcaagcatgtt 22505206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 46596370 - 46596260
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||||| | ||||||||||| ||||| ||||| ||||| | |||||| |||||  | ||||||||||||||| | ||||    
T  46596370 attcatcgtcgtttgggtcatccaagttttgataagttaaaggtgttggttcctcaacttttacatttgaagtcattggattgtgagtcatgtcaacttg 46596271  T
Q  116 gcaaacatgtt 126  Q
    |||| ||||||    
T  46596270 gcaagcatgtt 46596260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 37074469 - 37074578
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| ||||||| |||| | ||||||||||| || || ||||| || || ||||||||||||||  | |||||||| |||||| ||||||    
T  37074469 attcatcgtcgtttgggtcatcgaagtttggataagttaaaggtattagttcctcacctttcacatttaaagtcattggattgtgaatcatgtcagcttg 37074568  T
Q  116 gcaaacatgt 125  Q
    ||||||||||    
T  37074569 gcaaacatgt 37074578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 50960195 - 50960295
Alignment:
Q  26 gtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttggcaaacatgt 125  Q
    |||| |||||||||||| ||||||||||||| |||||  |||| ||| | |||||||| |||||  | ||||||||||||||| | ||||||||||||||    
T  50960195 gtttgggtcatccaagtttagataagttaaaggtgttgattcctcaattttcacatttgaagtcattggattgtgagtcatgtcaacttggcaaacatgt 50960294  T
Q  126 t 126  Q
    |    
T  50960295 t 50960295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 36998371 - 36998587
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||| | ||||    
T  36998371 attcatcatcgtttgggtcatccaagtctagataagttaaaagtgttggttccataactctcacatttaaagtctcttgattgtgagtcgtgtcaacttg 36998470  T
Q  116 gcaaacatgttcggacatctcttcacaacaagacaaataaaagatccaaacatgcttttgatattgtccattctgatatttggggtcctattcatgtgcc 215  Q
    |||||||||||||||||||| |||| | ||     ||||||||||| || ||||| || |||||||| |||| ||||||||||||||||| ||   ||||    
T  36998471 gcaaacatgttcggacatcttttcatagcagtgtcaataaaagatctaagcatgccttcgatattgtgcattttgatatttggggtcctagtcgcatgcc 36998570  T
Q  216 ctctaatttaggataca 232  Q
     ||||||||||||||||    
T  36998571 ttctaatttaggataca 36998587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 43734427 - 43734537
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||||| | ||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||||||||||||| | ||||    
T  43734427 attcatcgtcgtttgggtcatccaagttttgataagttaaaggtgttggttcctcaactttcacatttgaagtcattggattgtgagtcatgtcaacttg 43734526  T
Q  116 gcaaacatgtt 126  Q
    |||||||||||    
T  43734527 gcaaacatgtt 43734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 13327917 - 13327795
Alignment:
Q  15 tattcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagctt 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  13327917 tattcatcatcgtttaggtcattcaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcacgttaactt 13327818  T
Q  115 ggcaaacatgttcggacatctct 137  Q
    |||||||||||||||||||||||    
T  13327817 ggcaaacatgttcggacatctct 13327795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 13327516 - 13327413
Alignment:
Q  132 atctcttcacaacaagacaaataaaagatccaaacatgcttttgatattgtccattctgatatttggggtcctattcatgtgccctctaatttaggatac 231  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  13327516 atctcttcacaaaaagacaaataaaagatccaaacatgcttttgatattttccattatgatatttggggtcctaatcatgtgccctctaatttaggatac 13327417  T
Q  232 aagt 235  Q
    ||||    
T  13327416 aagt 13327413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 6998221 - 6998331
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||||| | ||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||||||||||||| | ||||    
T  6998221 attcatcgtcgtttgggtcatccaagttttgataagttaaaggtgttggttcctcaactttcacatttgaagtcattggattgtgagtcatgtcaacttg 6998320  T
Q  116 gcaaacatgtt 126  Q
    |||||||||||    
T  6998321 gcaaacatgtt 6998331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 8983702 - 8983806
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| | |||| |||||||||| | | | ||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||| |||    
T  8983702 attcatcgttgtttgggtcatccaaatatgggtaagtcaaaagtgtttgttcctcaactgtcacattttatgtctcttgattgtgagtcgtgttagattg 8983801  T
Q  116 gcaaa 120  Q
    |||||    
T  8983802 gcaaa 8983806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 44265965 - 44265855
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||||| ||||||||||||| ||||| |||||  |||| ||||| || |||||  | ||||||||||||||| | ||||    
T  44265965 attcatcgtcgtttgggtcatccaagtttagataagttaaaggtgttggttccttaactttcacacttgaagtcattggattgtgagtcatgtcaacttg 44265866  T
Q  116 gcaaacatgtt 126  Q
    | |||||||||    
T  44265865 ggaaacatgtt 44265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 37980449 - 37980340
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| || ||| |||||||||||| | ||||||||||| || || ||||| || || ||||||||||||||  | |||||||| |||||| ||||||    
T  37980449 attcatcgtcatttgggtcatccaagtttggataagttaaaggtattagttcctcacctttcacatttaaagtcattggattgtgaatcatgtcagcttg 37980350  T
Q  116 gcaaacatgt 125  Q
    ||||||||||    
T  37980349 gcaaacatgt 37980340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 42359910 - 42359809
Alignment:
Q  24 tcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttggcaaacat 123  Q
    |||||| |||||||||||| | ||||||||||| || || ||||| || || ||||||||||||||  | |||||||| |||||| ||||||||||||||    
T  42359910 tcgtttgggtcatccaagtttggataagttaaaggtattagttcctcacctttcacatttaaagtcattggattgtgaatcatgtcagcttggcaaacat 42359811  T
Q  124 gt 125  Q
    ||    
T  42359810 gt 42359809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 7926731 - 7926841
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||| ||| | |||||||||||  |||| ||||| ||| | |||||||| |||||  | ||||||||||||||| | ||||    
T  7926731 attcatcgtcgtttgggtcatcctagtttcgataagttaaagatgttggttcctcaattttcacatttgaagtcattggattgtgagtcatgtcaacttg 7926830  T
Q  116 gcaaacatgtt 126  Q
    |||||||||||    
T  7926831 gcaaacatgtt 7926841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 45187016 - 45186907
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| | |||| |||||||||||| | ||||||||||| || ||  |||| || || ||||||||||||||  | |||||||| |||||| ||||||    
T  45187016 attcatcgtagtttgggtcatccaagtttggataagttaaaggtattaattcctcacctttcacatttaaagtcattggattgtgaatcatgtcagcttg 45186917  T
Q  116 gcaaacatgt 125  Q
    ||||||||||    
T  45186916 gcaaacatgt 45186907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 36498230 - 36498339
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| |||||| |||||||||||| | ||||||||||| || || ||||| || || ||||||||||||||  |||||||||| |||||| ||||||    
T  36498230 attcatcgtcgtttgggtcatccaagtttggataagttaaaggtattagttcctcacctttcacatttaaagtcatttgattgtgaatcatgtcagcttg 36498329  T
Q  116 gcaaacatgt 125  Q
    ||||||||||    
T  36498330 gcaaacatgt 36498339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 35002465 - 35002405
Alignment:
Q  172 tttgatattgtccattctgatatttggggtcctattcatgtgccctctaatttaggataca 232  Q
    ||||||||||| |||| |||| |||||||||||| |||||| |||| | ||||||||||||    
T  35002465 tttgatattgttcattatgatgtttggggtcctagtcatgtaccctattatttaggataca 35002405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 38503743 - 38503853
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagcttg 115  Q
    ||||||| ||||||  ||||||||||| | ||||||||||| ||||| ||||| ||||| |||||||| |||||  | ||||||||||||||| | ||||    
T  38503743 attcatcgtcgtttgagtcatccaagttttgataagttaaaggtgttggttcctcaactttcacatttgaagtcattggattgtgagtcatgtcaacttg 38503842  T
Q  116 gcaaacatgtt 126  Q
    |||| ||||||    
T  38503843 gcaagcatgtt 38503853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 11076129 - 11076015
Alignment:
Q  15 tattcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtcatgttagctt 114  Q
    |||||||| | |||| ||||||  |||||| ||||||||||| || || |||||| |||| |||||||||| | ||||  | | |||||| ||| | |||    
T  11076129 tattcatcgttgttttggtcatttaagtctggataagttaaaggtattggttccagaactttcacatttaacgactctaaactatgagtcttgtcaactt 11076030  T
Q  115 ggcaaacatgttcgg 129  Q
    |||||| ||||||||    
T  11076029 ggcaaatatgttcgg 11076015  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 21292522 - 21292609
Alignment:
Q  16 attcatcatcgtttaggtcatccaagtctagataagttaaaagtgtttgttccacaactgtcacatttaaagtctcttgattgtgagtc 104  Q
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T  21292522 attcatcgtcgttt-ggtcatccaagttttgataagttaaagatgttggttcctcaactttgacatttgaagtcattggattgtgagtc 21292609  T

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