View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17059_high_15 (Length: 245)
Name: NF17059_high_15
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_high_15 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 45382916 - 45383143
Alignment:
| Q |
18 |
ctatgaaacttaattgtcatacagaattacggcttannnnnnnnnnnnctaaatttt-gtgttacttttacttgttaacaatgagaaaagactcttgaag |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45382916 |
ctatgaaactta-ttgtcatacagaattacggcttattttttatttttctaaatttttgtgttacttttacttgttaacaatgagaaaagactcttgaag |
45383014 |
T |
|
| Q |
117 |
tgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgtcatttcttgaaatgtgtcatccctagttagcatttaatcttc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383015 |
tgaataattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgttatttcttgaaatgtgtcatccctagttagcatttaatcttc |
45383114 |
T |
|
| Q |
217 |
tctcaatcaaaatggctcatttgataaat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45383115 |
tctcaatcaaaatggctcatttgataaat |
45383143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 50084778 - 50084869
Alignment:
| Q |
66 |
ctaaattttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgt |
155 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||| |||||| |||||||||| ||||||||||| ||| | || | |||||||||||||||| |
|
|
| T |
50084778 |
ctaaaatttgtattaattttacttgttaacaaggagaaaggagactcttgatgtgaacaattgccttgaatttccagaaacaatgaaaatgt |
50084869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 31686728 - 31686828
Alignment:
| Q |
72 |
tttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattt |
169 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| ||| | || | ||||||||||||||| ||| || |||||| |
|
|
| T |
31686728 |
tttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacgattgtcttgcatttcctaaaacaatgaaaatgtcaaaagaactattt |
31686827 |
T |
|
| Q |
170 |
t |
170 |
Q |
| |
|
| |
|
|
| T |
31686828 |
t |
31686828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 25101927 - 25102080
Alignment:
| Q |
67 |
taaattttgtgttacttttacttgttaacaatgagaaa-agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagct |
165 |
Q |
| |
|
|||| ||||||| | |||||||| ||||||| |||||| ||||||||| || ||||| |||| ||||| || ||||| |||||||||| |||||||| |
|
|
| T |
25101927 |
taaaatttgtgtaagttttacttcttaacaaggagaaagagactcttggagggaacatttgtcttgtatttctggaaataatgaaaatgcctaatgagct |
25102026 |
T |
|
| Q |
166 |
attttttgtcatttcttgaaatgtgtcatccctagttagcatttaatcttctctc |
220 |
Q |
| |
|
|||||| | |||| |||| || || ||||||| |||||||| |||||||||| |
|
|
| T |
25102027 |
atttttatttttttc-tgaagtgcatcgtccctagctagcattttatcttctctc |
25102080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 27803089 - 27803033
Alignment:
| Q |
73 |
ttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgt |
127 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
27803089 |
ttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacaattgt |
27803033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 41978369 - 41978263
Alignment:
| Q |
66 |
ctaaattttgtgttacttttacttgttaacaatgagaaaaga--ctcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgag |
163 |
Q |
| |
|
||||| |||||||| |||||||||||| ||| ||| |||| ||||||||||||| |||||| ||| | || |||||||||||||||||| ||| || |
|
|
| T |
41978369 |
ctaaaatttgtgttgtttttacttgttagcaagaagataagaggctcttgaagtgaagaattgttttgcatttccggaaacaatgaaaatgtcaaaagaa |
41978270 |
T |
|
| Q |
164 |
ctatttt |
170 |
Q |
| |
|
||||||| |
|
|
| T |
41978269 |
ctatttt |
41978263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 16265516 - 16265448
Alignment:
| Q |
102 |
aaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctatttt |
170 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | || | |||||||||||||||| ||| ||||||||| |
|
|
| T |
16265516 |
aaaagactcttgaagtgaacatttgtcttgcatttccagaaacaatgaaaatgtcaaaatagctatttt |
16265448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 40688136 - 40688191
Alignment:
| Q |
76 |
tgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgt |
129 |
Q |
| |
|
||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
40688136 |
tgttaattttacttggtaacaatgagatactagactcttgaagtgaacaattgtgt |
40688191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 31344487 - 31344424
Alignment:
| Q |
66 |
ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgt |
129 |
Q |
| |
|
||||| ||||||||| |||||||| | |||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
31344487 |
ctaaagtttgtgttaattttacttcctgacaaagagataagactcttgaagtgaacacttgtgt |
31344424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 7620172 - 7620090
Alignment:
| Q |
76 |
tgttacttttacttgttaacaatgagaaa----agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatg |
154 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||||| ||||||||| ||| | |||| ||| |||||||||| |
|
|
| T |
7620172 |
tgttagttttacttgttaacaaggagaaaagagagactcttgaagttaacaattgtcttgcattttcaaaaataatgaaaatg |
7620090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 9151417 - 9151330
Alignment:
| Q |
66 |
ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaat |
153 |
Q |
| |
|
||||| ||||||||| | ||| || ||| || ||||||||||||||||||||||||||||| ||| | || |||||| |||||||| |
|
|
| T |
9151417 |
ctaaaatttgtgttattcctacatggtaataaagagaaaagactcttgaagtgaacaattgtcttgcatttctggaaacgatgaaaat |
9151330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University