View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17059_low_10 (Length: 326)

Name: NF17059_low_10
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17059_low_10
NF17059_low_10
[»] chr1 (1 HSPs)
chr1 (18-306)||(45685361-45685649)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 45685649 - 45685361
Alignment:
Q  18 cctgtctctggctgtgcagtcagaagaagcactcttccaccgttggatcgtgctactgagcatatagcatcgacagtggagaagccacctggaccagcgg 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45685649 cctgtctctggctgagcagtcagaagaagcactcttccaccgttggatcgtgctactgagcatatagcatcgacagtggagaagccgcctggaccagcgg 45685550  T
Q  118 aggcaatgaggagatcattggtggtgattggaggagtggtcatgtcgaagactaggtgggctgagaggcccagatgggctaagcgcatgcagaaggcttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45685549 aggcaatgaggagatcattggtggtgattggaggagtggtcatgtcgaagactaggtgggctgagaggcccagatgggctaagcgcatgcagaaggcttt 45685450  T
Q  218 gagcattaggccttcgcggccaacaccgtagaggaaaacgcggccgttttgagaggagatggtggagagttcggttagtaagaggtcaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45685449 gagcattaggccttcgcggccaacaccgtagaggaaaacgcggccgttttgagaggagatggtggagagttcggttagtaagaggtcaa 45685361  T

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