View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_12 (Length: 301)
Name: NF17059_low_12
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 33727530 - 33727816
Alignment:
| Q |
1 |
ttattttggtgggatcatcggcttgatgggg-atgttaaagactgcatttagtcatctttttgatctagctgataataaaatggcgatggcttatatgtt |
99 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33727530 |
ttattttggtgggatcatcggcttcatgggggatgttaaagactgcatttagtcgtctttttgatctagctgataataaaatggcgatggcttatatgtt |
33727629 |
T |
|
| Q |
100 |
ttctcttatgtnnnnnnnaggg--tggataggcctggaattggaggcgaagattattagcttgggaggaagagcaagcaagggagtgtagtgatctttta |
197 |
Q |
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| T |
33727630 |
ttctcttaggtgggggggggggggtggataggcctcgaattggaggcgaagattattagcttgggaggaagagcaagcaagggagtgtagtgatctttta |
33727729 |
T |
|
| Q |
198 |
attaacactattttgaagccttttgtttctaattggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
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| T |
33727730 |
attaacactattttgaaaccttttgtttctgataggtggatttgacatttacatgcttcgaagaactacaatgttacaagtgcttat |
33727816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 284
Target Start/End: Complemental strand, 36535113 - 36534957
Alignment:
| Q |
128 |
ggcctggaattggaggcgaagattattagcttgggaggaagagcaagcaagggagtgtagtgatcttttaattaacactattttgaagccttttgtttct |
227 |
Q |
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|||||| || |||||||| | |||||||||||||||||||||||| ||||||||| | |||||||||||||||| | |||| | ||| |||||||| |
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| T |
36535113 |
ggcctgaaagtggaggcggatattattagcttgggaggaagagcagatgagggagtgttgcgatcttttaattaacattgatttgcaacctcttgtttct |
36535014 |
T |
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| Q |
228 |
aattggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
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|
| T |
36535013 |
gacatgtggatttggcatttacatgtttcgaagaagtacaatgctacaagtgcttat |
36534957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 45127249 - 45127508
Alignment:
| Q |
28 |
ggggatgttaaagactgcatttagtcatctttttgatctagctgataataaaatggcgatg---gcttatatgttttctcttatgtnnnnnnnagggtgg |
124 |
Q |
| |
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||||||||||||||| |||||||| ||||||| ||||| |||||||| ||||||||||| ||| ||||||||| |||| || ||||||| |
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| T |
45127249 |
ggggatgttaaagacaagatttagtcgtcttttttatctaactgataatgaaatggcgatgatggctgatatgttttttcttgggtgggggggagggtgg |
45127348 |
T |
|
| Q |
125 |
ataggcctggaattggaggcgaagattattagcttgggaggaagagcaagcaagggagtgtagtgatcttttaattaacactattttgaagccttttgtt |
224 |
Q |
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| T |
45127349 |
agaggcctggaattggtgacagagattattagctcggaaggaagagtaggtgagggagtgcaacaatcttttaattaacattgttttgcggcctcttgtt |
45127448 |
T |
|
| Q |
225 |
tctaattggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
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| | | ||||| ||||||||||||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
45127449 |
tttgaccggtgggtttgacatttacatgtttcgaataattacaatgttacaagtgattat |
45127508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 13737108 - 13737059
Alignment:
| Q |
233 |
gtggatttgacatttacatgcttcgaagaattacaatgttacaagtgctt |
282 |
Q |
| |
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|||| ||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
13737108 |
gtggctttgacatttacatgcttccaacaatttcaatgttacaagtgctt |
13737059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 30999103 - 30999051
Alignment:
| Q |
232 |
ggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
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||||| |||| |||||||||||||| || || ||||||||||||||||||||| |
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| T |
30999103 |
ggtggttttgccatttacatgcttccaaaaaatacaatgttacaagtgcttat |
30999051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 9932860 - 9932808
Alignment:
| Q |
232 |
ggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
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|||||||||| || ||||||||||| || ||||| ||||| |||||||||||| |
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| T |
9932860 |
ggtggatttggcacttacatgcttccaacaattataatgtcacaagtgcttat |
9932808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 26369699 - 26369647
Alignment:
| Q |
232 |
ggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||| ||||| |||||||||||| |
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| T |
26369699 |
ggtggatttggcacttacatgcttccaacaattataatgtcacaagtgcttat |
26369647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 10252434 - 10252482
Alignment:
| Q |
236 |
gatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
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|||||| |||||||||||||| || || |||||||| |||||||||||| |
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| T |
10252434 |
gatttggcatttacatgcttccaacaaatacaatgtaacaagtgcttat |
10252482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 47591219 - 47591167
Alignment:
| Q |
232 |
ggtggatttgacatttacatgcttcgaagaattacaatgttacaagtgcttat |
284 |
Q |
| |
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||||||||||||| ||||||||||| || ||||| || || |||||||||||| |
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| T |
47591219 |
ggtggatttgacacttacatgcttccaacaattataacgtcacaagtgcttat |
47591167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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