View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_13 (Length: 285)
Name: NF17059_low_13
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_13 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 11999977 - 12000215
Alignment:
| Q |
14 |
cacagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttg |
113 |
Q |
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| T |
11999977 |
cacagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaataagaatgtggttg |
12000076 |
T |
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| Q |
114 |
tagttggtgaggaggaaggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaagagatatatggttcct |
213 |
Q |
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| T |
12000077 |
tagttggtgaggaggaaggagagtacgaattggcgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaagagataaatggttcct |
12000176 |
T |
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| Q |
214 |
aatttgttgtccggttctggttcgtattcgtgatgagtg |
252 |
Q |
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| T |
12000177 |
aatttgttgtccggttctggttcgtatccgtgatgagtg |
12000215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 14759405 - 14759168
Alignment:
| Q |
16 |
cagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgta |
115 |
Q |
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| T |
14759405 |
cagatcatgcgaacttcttcgttagaatctagttgtaatgctattgtacgacaacgccaaaagtatgcggctatgacttcaaaattggagtatttttgca |
14759306 |
T |
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| Q |
116 |
gttggtgaggaggaaggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaagagatatatggttcctaa |
215 |
Q |
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| T |
14759305 |
attggtgagtcggaaggagagagcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcc--- |
14759209 |
T |
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| Q |
216 |
tttgttgtccggttctggttcgtattcgtgatgagtgcatg |
256 |
Q |
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| T |
14759208 |
tttgttgtcgggttctggatcgtattcacgatgagtacatg |
14759168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 14878335 - 14878557
Alignment:
| Q |
16 |
cagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgta |
115 |
Q |
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| T |
14878335 |
cagattatgcgaacttcttcgttagaatctagttgaaatgctattgtacgacaac-ccaaaagtatgcggctatgatttcaaaattggagtattgttgca |
14878433 |
T |
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| Q |
116 |
gttggtgaggaggaaggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaagagatatatggttcctaa |
215 |
Q |
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| T |
14878434 |
tttggttaggtggaaggagagtgcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcc--- |
14878530 |
T |
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| Q |
216 |
tttgttgtccggttctggttcgtattc |
242 |
Q |
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| T |
14878531 |
tttgttgtcgggttctggatcgtattc |
14878557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 14786494 - 14786662
Alignment:
| Q |
30 |
ttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgtagttggtgaggagga |
129 |
Q |
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| T |
14786494 |
ttcttcgttagtatctagttgtaatgctattgtacgacaacgccaacaaaatgcagagatgatttcaaagtcggtgtgttgttgtagtggatgaaccgga |
14786593 |
T |
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| Q |
130 |
aggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaag |
198 |
Q |
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| T |
14786594 |
aggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaag |
14786662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 14873506 - 14873631
Alignment:
| Q |
47 |
gttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgtagttggtgaggaggaaggagagcacgaattgc |
146 |
Q |
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| T |
14873506 |
gttgtaacgcaattgtacgacaacgccaaaggaatgcagtgaggatttcaaaattagagt---gttcttgttggtgaggtggaagaagagcgcgtattgc |
14873602 |
T |
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| Q |
147 |
cgccacctcggtgggaccaaagaagaaag |
175 |
Q |
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| T |
14873603 |
ggctacctcagtgggaccgaagaagaaag |
14873631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 14767394 - 14767573
Alignment:
| Q |
16 |
cagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgta |
115 |
Q |
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| T |
14767394 |
cagattatgcgaacttcttcgtcagtgtctggttgtaacgcgattgtacgacaacgccaaaggcatgcagtgaggatttcaaaattgga---ttgttttt |
14767490 |
T |
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| Q |
116 |
gttggtgaggaggaaggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaag |
198 |
Q |
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| T |
14767491 |
gttggtgaggcgggagaagagcgcgaatttttgctacctcggttggaccgaagaaaaaagagcgatgagccatgtcatctaag |
14767573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 84395 - 84627
Alignment:
| Q |
16 |
cagattatgtgaatttcttcgtcaatatttagttgtaatgctattgtacgataacgccaaaaatatgcggagatgatttcaaaattagaatgtggttgta |
115 |
Q |
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| T |
84395 |
cagattatgcgaacttcttcgttagtatctagttgtaacgctagtgtacgacaacgccaaaaatatgatgtgatgatttcaaaattggagtatttttgtt |
84494 |
T |
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| Q |
116 |
gttggtgaggaggaaggagagcacgaattgccgccacctcggtgggaccaaagaagaaagtgcggtgcatcatgtcatctaagagatatatggttcctaa |
215 |
Q |
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| T |
84495 |
gttgttgaggtggaagtagagaacgaattgcggctacctcggttgcaccaaagaagaaagcatggtggaccatgtcatctaaggaaaatgtgtttgc--- |
84591 |
T |
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| Q |
216 |
tttgttgtccggttctggttcgtattcgtgatgagt |
251 |
Q |
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| T |
84592 |
tttgttgtcaggttctggttcgtattcacgatgagt |
84627 |
T |
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