View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_18 (Length: 230)
Name: NF17059_low_18
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 16298504 - 16298280
Alignment:
| Q |
6 |
agtaagagtacctgaacatttacaacaagaattggtggaaatttggcagtggaactaacattaggaagttcaacaaaccgagcaatatggtccacttttc |
105 |
Q |
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| T |
16298504 |
agtaagagtacctgaacatttacaacaagaattggtggaaatttggcagtggaactaacattaggaagttcaacaaaccgagcgatatggtccacttttc |
16298405 |
T |
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| Q |
106 |
gcggagataagaaaacatcaactccaaatggataatatgcagaatagtttggagcaaattccttcttcctatccctgtcataatgaacaacagctacttc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298404 |
gcggagataagaaaacatcaactccaaatggataatatgcagaatagtttggagcaaattccttcttcctatccctgtcataatgaacaacagctacttc |
16298305 |
T |
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| Q |
206 |
aacactattttctatgaatgtgtat |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
16298304 |
aacactattttctatgaatgtgtat |
16298280 |
T |
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