View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_19 (Length: 211)
Name: NF17059_low_19
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 40548159 - 40548062
Alignment:
| Q |
19 |
agactgaatactttaggtctaacatttaggccaaccttggcacaacaagtgtacatagaaaacataagtatatataatgtttgcatttttctcaagtagt |
118 |
Q |
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| T |
40548159 |
agactgaatactttaggtctaacatttaggccaaccttggcacaacaagtgtacatag--aacataagtatatataatgtttgcacttttctcaagtagt |
40548062 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 40548044 - 40548007
Alignment:
| Q |
136 |
tagggaataacaaaagtgaaaaattccaccatgaaatg |
173 |
Q |
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| T |
40548044 |
tagggaataacagaagtgaaaaattccaccatgaaatg |
40548007 |
T |
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