View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_2 (Length: 537)
Name: NF17059_low_2
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Original strand, 30916746 - 30917252
Alignment:
| Q |
17 |
aggatccatcattaacacaaaaaatttcacctttaagataacgagataaagtcaatattgctcaacaaatttcatagcaagttgcaatacatatttcatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30916746 |
aggatccatcattaacacaaaaaatttcacctttaagataacaagataaagtcaatattgctcaacgaatttcatagcaagttgcaatacatatttcatc |
30916845 |
T |
|
| Q |
117 |
aacaattgaacgcaaaatattgttctttaaacataagactattcatcatatgattatcatcatcaatgacgagttcgggatttttccttaaaagaatcct |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30916846 |
aacaatcaaacgcaaaatattgttctttaaacataagactattcttcatatgattatcatcatcaatgacgagttcaggatttttccttaaaagaatcct |
30916945 |
T |
|
| Q |
217 |
ctttggatttaccaacaaaatgcatt-gtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgaccttgggcgcaactattacaa |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30916946 |
ctttggatttaccaacaaaatgcatttgtctgcttgtttaacctcatgcaaagtcatcactccagactacggatgacgacctagggcgcaactattacaa |
30917045 |
T |
|
| Q |
316 |
actggatcaagacccataatcttcattgtctaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctcaacgactagctctg |
415 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30917046 |
actggatcaagacccataatcttcgttgtgtaaggcctaatcacactgaagaacaaccttatactttcactactctgtaacgcctcaacgactagctctg |
30917145 |
T |
|
| Q |
416 |
gatgcttaccattatgtaatgcctcgacaacaagtaacagttttcggagctgaatattgacaagcgtcatctaaaatagaccttccatcactccccgacg |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
30917146 |
gatgcttaccattatgtaatgcctcgacaacaagtaacagttttcggggctgaatattgacaagcgtcgtccaaaatagaccttccatcactccccgatg |
30917245 |
T |
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| Q |
516 |
gttctgt |
522 |
Q |
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||||||| |
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| T |
30917246 |
gttctgt |
30917252 |
T |
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