View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_20 (Length: 208)
Name: NF17059_low_20
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 13336380 - 13336562
Alignment:
| Q |
10 |
agcagcacagaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcgccatcaaa |
109 |
Q |
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| T |
13336380 |
agcatcacaaaatgactctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcaccatcaaa |
13336479 |
T |
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| Q |
110 |
accacaaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggag |
192 |
Q |
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| T |
13336480 |
accacaaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggag |
13336562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 13339718 - 13339900
Alignment:
| Q |
10 |
agcagcacagaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcgccatcaaa |
109 |
Q |
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| T |
13339718 |
agcatcacaaaatggctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattcatcaccatcaaa |
13339817 |
T |
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| Q |
110 |
accacaaccaagtctaggaagtacaatttctttctccataacaaaattcgatgatgaaagtcccaacatatttgtcaagggag |
192 |
Q |
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| T |
13339818 |
accacaaccaagtctaggaagtacaatttctttctccatgacaaaattcgatgatgaaagtcccaacatatttgtcaagggag |
13339900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 13345543 - 13345616
Alignment:
| Q |
25 |
ctctttcttcagcacttattaaaattttcattactttcctcttcctacaaaaccatgtcaattcacaatattca |
98 |
Q |
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| T |
13345543 |
ctctttcttccgcacttattaaaatctacattactttcgtcttcctacaataccatgtgaattcacaatattca |
13345616 |
T |
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