View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_3 (Length: 501)
Name: NF17059_low_3
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 458
Target Start/End: Complemental strand, 21354246 - 21353800
Alignment:
| Q |
12 |
aattctacaaaaataacaacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgcagtttcatgctatccaaacatctcaatcgaagaaaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21354246 |
aattctacaaaaataacaacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgtagtttcatgctatccaaacatctcaatcgaagaaaa |
21354147 |
T |
|
| Q |
112 |
tttggctttcgaatccaatcaaagcaaaataagaaatccttttggaatcagcaagcgattaatgagtaattttgttaatatatggggatattagaagtat |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21354146 |
tttggctttcgaattcaatcaaagcaaaataagaaatccttttggaatcagcaagcgattaatgagtaattttgttaatatatggggatattagaaatat |
21354047 |
T |
|
| Q |
212 |
atgtgagttggatagtactttttgcattttttgattgtaataatccaggcccaattattttgaagaggcccttaaaacaaaaccctaaaatcacaaccgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21354046 |
atgtgagttggatagtactttttgcattttttgattgtaataatccaggcccaattattttgaagaggcccttaaaacaaaaccctaaaatcacaaccgg |
21353947 |
T |
|
| Q |
312 |
ttcatcctttttgcatcacaaactcgttggattggaattcgtacagtctcactgaactcaacgccgccggagttcttcgtcggcagccacaaacagtaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21353946 |
ttcatcctttttgcatcacaaactcgttggattggaattcgtacagtctcactgaactcaacgccgccggagttcttcgtcggcagccacaaacagtaag |
21353847 |
T |
|
| Q |
412 |
aatctctgtcattttcttcctttcagtttttcaatacttctttactc |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21353846 |
aatctctgtcattttcttcctttcagtttttcaatacttctttactc |
21353800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 300 - 458
Target Start/End: Complemental strand, 31381 - 31223
Alignment:
| Q |
300 |
aatcacaaccggttcatcctttttgcatcacaaactcgttggattggaattcgtacagtctcactgaactcaacgccgccggagttcttcgtcggcagcc |
399 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31381 |
aatcacaacccgttcatcctttttgcatcacaaactcgttggatgggaattcgtacagtctcactgaactcaacgccgccggagttcttcgtcgtcagcc |
31282 |
T |
|
| Q |
400 |
acaaacagtaagaatctctgtcattttcttcctttcagtttttcaatacttctttactc |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31281 |
acaaacagtaagaatctctgtcattttcttcctttcagtttttcaatacttctttactc |
31223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 29534 - 29681
Alignment:
| Q |
12 |
aattctacaaaaataacaacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgcagtttcatgctatccaaacatctcaatcgaagaaaa |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
29534 |
aattctacaaaaataacaataggatagaatgaaacatagaaaacaagcgattaagaaacagtgtagtttcagactatccaaacatctcaatcgaagaaaa |
29633 |
T |
|
| Q |
112 |
tttggctttcgaatccaatcaaagcaaaataagaaatccttttggaat |
159 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29634 |
tttagctttcgaatgcaatcaaagcaaaataagaaatccttttggaat |
29681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 21352540 - 21352685
Alignment:
| Q |
12 |
aattctacaaaaataacaacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgcagtttcatgctatccaaacatctcaatcgaagaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
21352540 |
aattctacaaaaataacaacaggatagagtgaaacatagaaaacaagcgattaagaaacagtgtagtttcatgctatccaaacatctcagtcgaagaaaa |
21352639 |
T |
|
| Q |
112 |
tttggctttcgaatccaatcaaagcaaaataagaaatccttttggaat |
159 |
Q |
| |
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||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21352640 |
tttagctttcgaat--aatcaaagcaaaataagaaatccttttggaat |
21352685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 21365704 - 21365851
Alignment:
| Q |
12 |
aattctacaaaaa-taacaacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgcagtttcatgctatccaaacatctcaatcgaagaaa |
110 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| | |||||||||||||||||| |
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| T |
21365704 |
aattctacaaaaaataacaataggataaaatgaaacatagaaaacaagcgattaagaaacattgtagtttcagactatc-atacatctcaatcgaagaaa |
21365802 |
T |
|
| Q |
111 |
atttggctttcgaatccaatcaaagcaaaataagaaatccttttggaat |
159 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21365803 |
atttagctttcgaatccaatcaaagcaaaataagaaatccttttggaat |
21365851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 485
Target Start/End: Complemental strand, 21353753 - 21353724
Alignment:
| Q |
456 |
ctccaaaaacgaccagatatatgctgtttg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
21353753 |
ctccaaaaacgaccagatatatgctgtttg |
21353724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 15299097 - 15299223
Alignment:
| Q |
29 |
aacaggatagaatgaaacatagaaaacaagcgattaagaaacagtgcagtttcatgctatccaaacatctcaatcgaagaaaatttggctttcgaatcca |
128 |
Q |
| |
|
|||||||||| | ||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||| || |
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| T |
15299097 |
aacaggataggaggaaacatagaaaataagcaattaagaaacagtgtagtttcagactatccaaacatctcaatcgaagcaaatttagctttcgaataca |
15299196 |
T |
|
| Q |
129 |
atcaaagcaaaataagaaatccttttg |
155 |
Q |
| |
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| |||| |||||||||||||| ||||| |
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| T |
15299197 |
aacaaaacaaaataagaaatctttttg |
15299223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 27865386 - 27865319
Alignment:
| Q |
337 |
gttggattggaattcgtacagtctcactgaactcaacgccgccggagttcttcgtcggcagccacaaaca |
406 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27865386 |
gttggattggaatttgta--gtctcactgaactcaacgccgccggagttcttcgtcggaagccacaaaca |
27865319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 825035 - 825093
Alignment:
| Q |
392 |
cggcagccacaaacagtaagaatctctgtcattttcttcctttcagtttttcaatactt |
450 |
Q |
| |
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||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||| |
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|
| T |
825035 |
cggcatccacaaacagtaagaatctccatctttttcttcctttcagcttttcaatactt |
825093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 824903 - 824949
Alignment:
| Q |
245 |
attgtaataatccaggcccaattattttgaagaggcccttaaaacaa |
291 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||||| ||||| |
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|
| T |
824903 |
attgtaataatcaaggcccaatccttttgaagaggcccttataacaa |
824949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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