View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_4 (Length: 496)
Name: NF17059_low_4
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 12624544 - 12625039
Alignment:
| Q |
1 |
gctttgaaaataattatgaaacaactgattacaactttgtacgatactaccaaacttgatgatactgttgctgcctccatgaaaaacatcgaccactaaa |
100 |
Q |
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| T |
12624544 |
gctttgaaaataattatgaaacaactgattacaactttgtacgatactaccaaactcgatgatattgtttctgcctccatgaaaaacatcgaccacaaaa |
12624643 |
T |
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| Q |
101 |
ttcgagtgtaaaaccatgttactgaaatgaaggacgtcggctgctcatagtaacacctgataaactcacattgcttcgtctgtcttcactgaacacaatg |
200 |
Q |
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| T |
12624644 |
ttcgagtgtaaaaccatgttactgaaatgtaggacgtcagctgctcatagtaacacctgataaagtcacattgcttcgtctgtcttcactgaacacaatg |
12624743 |
T |
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| Q |
201 |
gggaaaaccagatggtctttgcaagcaaaatgcatctgtcggcatcacgaatgaacatatcaataccagccttattcttagatgatgagaaagaggcgtc |
300 |
Q |
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| T |
12624744 |
gggaaaaccagatggtctttgcaagcaaaatgcatctgtcggcatcacgaatgaacatatcaataccagccttattcttagatgatgagaaagaggcgtc |
12624843 |
T |
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| Q |
301 |
gacattacatttaaatctacctggggatgcttttctccatcgatggctgatatcattactcggttcaggctgttgatgcacatctacgtgtctgaacttg |
400 |
Q |
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| T |
12624844 |
gacattacatttaaatctacctggggatgcttttttccaacgatggctgatatcattactcggttcaggctgttgatgcacatctacgtgtctgaacttg |
12624943 |
T |
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| Q |
401 |
tttgcattccttcagccattttccaatcctcaagtaaatccatggcatgcgctccaacacctgggcattgtctcgtccacttgctgctataatttc |
496 |
Q |
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| T |
12624944 |
tctgcattccttcagccattttccaatcctcaagtaaatccatggcgtgcgctccaacacctgggcattgtctcgtccacttgctgccataatttc |
12625039 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 18572591 - 18572675
Alignment:
| Q |
239 |
tcggcatcacgaatgaacatatcaataccagccttattcttagatgatgagaaagaggcgtcgacattacatttaaatctacctg |
323 |
Q |
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| T |
18572591 |
tcggtatcacgaacgcacataccaatactaaccttattatgagcggaagagaaagaagcatcaacattacatttaaatctacctg |
18572675 |
T |
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