View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_5 (Length: 428)
Name: NF17059_low_5
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 283 - 410
Target Start/End: Complemental strand, 33719312 - 33719185
Alignment:
| Q |
283 |
ttcatgaattgttgaaaatcagcttccccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgat |
382 |
Q |
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||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33719312 |
ttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgat |
33719213 |
T |
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| Q |
383 |
tcatattctcatcctttgttacatgctt |
410 |
Q |
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| T |
33719212 |
tcatattctcatcctttgttacatgctt |
33719185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 33719684 - 33719516
Alignment:
| Q |
1 |
atttacatcattttcnnnnnnnttcaaattattattattcaaggatttaaattctctcaaaacattatattcgcgttnnnnnnnnnnnnnncacttttag |
100 |
Q |
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| T |
33719684 |
atttacatcattttcaaaaaaattcaaattattattattcaaggatttaaattctctcaaaacattaaattctcgttaaaaaaaaaa----cacttttag |
33719589 |
T |
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| Q |
101 |
ggagtacagcaattctacgaagcagattcttcttcaaaatcaaacattgaaatcactatttgcacttgcagaa |
173 |
Q |
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| T |
33719588 |
ggagtacagcaattctacaaagcggattcttcttcaaaatcaaacattgaaatcactatttgcacttgcagaa |
33719516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 33719477 - 33719409
Alignment:
| Q |
178 |
gattatgcacattgcacagcaaagctaatcaatacacttaatctcagtcaaccactagttaaacatgct |
246 |
Q |
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| T |
33719477 |
gattatgcacattgcacagcaaagctaatcaatacacttaatctcagtctaccactagttaaacatgct |
33719409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 33735974 - 33735866
Alignment:
| Q |
291 |
ttgttgaaaatcagcttccccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgattcatattc |
390 |
Q |
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|||||||||||||||||| || || |||||| |||||||||||| ||||||| ||||||| ||| | |||| |||||||| |||||||||||||||||| |
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| T |
33735974 |
ttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcatattc |
33735875 |
T |
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| Q |
391 |
tcatccttt |
399 |
Q |
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|| |||||| |
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| T |
33735874 |
tcgtccttt |
33735866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 33750786 - 33750685
Alignment:
| Q |
291 |
ttgttgaaaatcagcttccccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgattcatattc |
390 |
Q |
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|||||||||||||| |||||||| |||||| |||||||||||||| |||||||| |||| || | |||| ||| ||||||||||||||||||||||| |
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| T |
33750786 |
ttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactttgcatttcttgattcatattc |
33750687 |
T |
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| Q |
391 |
tc |
392 |
Q |
| |
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|| |
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| T |
33750686 |
tc |
33750685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 33751061 - 33751001
Alignment:
| Q |
111 |
aattctacgaagcagattcttcttcaaaatcaaacattgaaatcactatttgcacttgcag |
171 |
Q |
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|||||||| ||||||||||||| ||||| |||| ||||||||||| |||||||||||||| |
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| T |
33751061 |
aattctacatagcagattcttctgcaaaaacaaaaattgaaatcacgatttgcacttgcag |
33751001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 33721308 - 33721214
Alignment:
| Q |
291 |
ttgttgaaaatcagcttc---cccaatgctatccaaaaaatcacaatc---cttattattctcaaaccccgtcattgtttcaatttgcatttctt |
379 |
Q |
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|||||||||||||||||| |||||| |||||| |||||||||| || | |||||||| |||| ||| || |||| |||||||||||||||| |
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| T |
33721308 |
ttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctcaatttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 33719400 - 33719371
Alignment:
| Q |
261 |
tcactgttcatttgttgttgaattcatgaa |
290 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33719400 |
tcactgttcatttgttgttgaattcatgaa |
33719371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 32576296 - 32576254
Alignment:
| Q |
113 |
ttctacgaagcagattcttcttcaaaatcaaacattgaaatca |
155 |
Q |
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|||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
32576296 |
ttctacaaagcagattcttctgcaaaatcaaacattaaaatca |
32576254 |
T |
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