View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_6 (Length: 419)
Name: NF17059_low_6
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 35356047 - 35356381
Alignment:
| Q |
16 |
gttatcacccatataattaaaatctctcctctcattgctcattcctcctctctgtcaaaatatttaacggactctaagtcaaacataattaatttatttt |
115 |
Q |
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| T |
35356047 |
gttatcacccatataattaaaatctctcctctcattgctcattcctcctctctgtcaaaatatttaacggactctaagtcaaacataatgaatttatttt |
35356146 |
T |
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| Q |
116 |
aaaaaagatttatttctcttacaaaaattccttnnnnnnntgagacatgctgtgtatgtgtgtgtagtcgagatcgagtctatctttaacgttagcactg |
215 |
Q |
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| T |
35356147 |
aaaaaagatttatttctcttacaaaaattccttaaaaaaatgagacatgctgtgtatgtg----tagtcgagatcgagtctatctttaacgttagcactg |
35356242 |
T |
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| Q |
216 |
gtaatggaatttttctaatatttaggaatcactaaatattgtttggacaattaatttaattttggaatgcatttattatgaaattaaacccaaaatagaa |
315 |
Q |
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| T |
35356243 |
gtaatggaatttttctaatatttaggaatcactaaatattgtttggacaattaatttaattttggaatgcatttattatggaattatacccaaaatagaa |
35356342 |
T |
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| Q |
316 |
aaaagaaacccgcctactgcgtacatagtattgctcatt |
354 |
Q |
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| T |
35356343 |
aaaagaaacccgcctactgcgtacatagtattgctcatt |
35356381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 106 - 354
Target Start/End: Original strand, 35350977 - 35351226
Alignment:
| Q |
106 |
aatttattttaaaaaagatttatttctcttacaaaaattccttnnnnnnntgagacatgctgtgtatgtgtgtgtagtcgagatcgagtctatcttt-aa |
204 |
Q |
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| T |
35350977 |
aatttcttttaaaaaggatttattgctcttatgaaaattccttaaaaaaatgagacatgctgtgtatgtatgtatagtcgagatcgagtctattttttaa |
35351076 |
T |
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| Q |
205 |
cgttagcactggtaatggaatttttctaatatttaggaatcactaaatattgtttggacaattaatttaattttggaatgcatttattatgaaattaaac |
304 |
Q |
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| T |
35351077 |
cgttagcactggaaatggattttttctaatttttaggaatcattaaatattgtttggacgattaatttaattttggaatgcatttattatgaaaataaac |
35351176 |
T |
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| Q |
305 |
ccaaaatagaaaaaagaaacccgcctactgcgtacatagtattgctcatt |
354 |
Q |
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| T |
35351177 |
ccaaaatagaaaaaacaaacctgcttactgcgtacatattattgttcatt |
35351226 |
T |
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