View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_7 (Length: 406)
Name: NF17059_low_7
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 17777948 - 17778187
Alignment:
| Q |
18 |
aaagtaagagatcatcactcacaagaactttgcaaaagaagcttgattagatgaaggaacattgagtttgagatttggagctaaacatcccttcttcatg |
117 |
Q |
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| T |
17777948 |
aaagtaagagatcatcactcacaagaactttgcaaaagaagcttgattagatgaaggaacattgagtttgagatttggagctaaacatcctttcttcatg |
17778047 |
T |
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| Q |
118 |
attatttggctcctaagctctcatgtgagagagc--tataagaaagactttaatgaaagatattggtcataatattatgtgactaactaaatgtatgtac |
215 |
Q |
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| T |
17778048 |
attatttggctcctaagctctcatgtgagagagctatataagaaagactttaatgaaagatattggtcatagtattatgtgacttactaaatgtatgtac |
17778147 |
T |
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| Q |
216 |
tattatatagtatagtatgtattgactataagtatttaat |
255 |
Q |
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| T |
17778148 |
tattatatagtatagtatgtattgactattagtatttaat |
17778187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 249 - 393
Target Start/End: Original strand, 17778205 - 17778349
Alignment:
| Q |
249 |
atttaatttgcaatgtttggttggtgtgaagattcaaccttgactattggagaaaaaggagaaagtttgaagatgaagaagacttgcaatattgactttt |
348 |
Q |
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| T |
17778205 |
atttaatttgcaatgtttgattggtgtgaagattcaaccttgactattggagaaaaaggagaaagtttgaagatgaagaagacttgcaatattgactttt |
17778304 |
T |
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| Q |
349 |
cagacatgttacgctcttaacacacagtttcttgcttttttgttc |
393 |
Q |
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| T |
17778305 |
cagacatgttatcctcttaacacacagtttcttgcctttatgttc |
17778349 |
T |
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