View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17059_low_8 (Length: 404)
Name: NF17059_low_8
Description: NF17059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17059_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 42014250 - 42014625
Alignment:
| Q |
7 |
ttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaagcgcttctggaa |
106 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42014250 |
ttaacattcacaatcccatcatcttcctctcattcctcaccgatcaccgtctctgacacactcgatagttacctcaccgacccaagaagcgcttctggaa |
42014349 |
T |
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| Q |
107 |
gtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaagttctcttgttggtactgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014350 |
gtttccagaacgatggtgttctttcatctggtgatgttgccgatgttgagtttggattctcaagacctgattttcgacaaagttctcttgttggtactgt |
42014449 |
T |
|
| Q |
207 |
tcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttgatcggttgcctaggttgctt |
306 |
Q |
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| T |
42014450 |
tgagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttgatcggttgcctaggttgctt |
42014549 |
T |
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| Q |
307 |
tatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagttctttgatttttgaaacatttat |
382 |
Q |
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| T |
42014550 |
tatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagttctttgatttttgaaacatttat |
42014625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 1247472 - 1247853
Alignment:
| Q |
1 |
gaacccttaacattcacaatgccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcaccgatccaagaagcgctt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
1247472 |
gaacccttaacattcacaatcccatcatcttcctctcattcctcaccaatcaccgtctctgacacactcgatagttacctcactgacccaagaagcgctt |
1247571 |
T |
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| Q |
101 |
ctggaagtttccagaacgatggtgttctttcatctggtgatgttactgatgttgagtttggattctcaagacctgattttcgacaaagttctcttgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1247572 |
ctggaagtttccagaacgatggtgttctttcatctggtgatgttgctgatgttgagtttggattctcaagacctgattttcggcaaagttctcttgttgg |
1247671 |
T |
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| Q |
201 |
tactgttcagttgtacgaacgacacgtgtttctttgttataagaatcccaggttttggcctcctaggattgaagctgctgagtttgatcggttgcctagg |
300 |
Q |
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| T |
1247672 |
tactgttgagttgtacgaacgacacgtgtttctatgttataagaatcccagattttggcctcctaggattgaagctgctgagtttgatcggttgcctagg |
1247771 |
T |
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| Q |
301 |
ttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagttctttgatttttgaaacatttat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1247772 |
ttgctttatgctgctgttaaagctaggaagaatcatatgaagaaggaggtagtaaaagttctttgatttttgaaacatttat |
1247853 |
T |
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