View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_10 (Length: 558)
Name: NF1705_high_10
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Original strand, 40054007 - 40054530
Alignment:
| Q |
17 |
agaatacaagatcggcaattttttgcggagtataaaagacaatgaggcaatacctgtgaatccaatggatttgattcgcgggagacaatgccctgtatgc |
116 |
Q |
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| T |
40054007 |
agaatacaagatcggcaatttgttgagaagtataaaagacaatgaggcaatacctgtgaatccaatggatttgattcgcgggagacaatgccctgtatgc |
40054106 |
T |
|
| Q |
117 |
tgataactgctgctgaagcggccaaaacaggatcagcagagttacgagggttcgcagaagaggctcttttcccacttatcacggctctgaaaaaaccaca |
216 |
Q |
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| T |
40054107 |
tgataactgctgctgaagcggccaaaacaggatcagcagagttacgagggttcgcagcagaggctcttttcccacttatcacggctctgaaaaatccaca |
40054206 |
T |
|
| Q |
217 |
tccagccaacaggggtccaggcctcgacccaatcataccagtcgggtgctcatgggatacatgaactgcaaatatagcctccacatcctccaaagcaccg |
316 |
Q |
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| T |
40054207 |
tccagccaacaggggtccaggcctcgacccaatcataccagtcgggtgctcatgggatacatgaactgcaaatatagcctccacatcctccaaagcaccg |
40054306 |
T |
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| Q |
317 |
tcttgtatcattcgctttgcaccattcccagcttcttctgctggctggaataacagaattacagtaccctgtgatgacggaacaaaaatgctgagttaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40054307 |
tcttgtatcattcgctttgcaccattcccagcttcttctgctggctggaataacagaattacagtaccctgtgatgacagaacaaaaatgctgagttaaa |
40054406 |
T |
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| Q |
417 |
ggcatgggttgtaggggatatgctatgaagtatgaagtttagtttagtgacacaatttcttttttcatccaatattgcatagtggagcaggcataatttg |
516 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40054407 |
ggcatgggttgtaagggatatgctatgaagtatgaagtttagtttagtgacacaatttcttttttcatccaatattgcatagtggagcaggcataatttg |
40054506 |
T |
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| Q |
517 |
caggagttgcaattaccattttaa |
540 |
Q |
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| T |
40054507 |
caggagttgcaattaccattttaa |
40054530 |
T |
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