View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_high_107 (Length: 237)
Name: NF1705_high_107
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_107 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34581160 - 34581379
Alignment:
| Q |
1 |
ctagagtcgacacattggttttgttgttacttcctaataaacgagtagctgtagatgatggaatacttgcaatattcatgaaccctacaaggatgcaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34581160 |
ctagagtcgacacattggttttgttgttacttcctaataaacgagcagctgtagatgatggaatacttgcaatattcatgaaccctacaaggatgcaaaa |
34581259 |
T |
|
| Q |
101 |
tacaagtaccaccatctttgccattgcactttcaatgaacttgaggagaatgtgtgatgaatatttccaataaccatggttctatatatatactagtgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34581260 |
tacaagtaccaccatctttgccattgcactttcaatgaacttgaggagaatgtgtgatgaatatttccaataaccatggttctatatatatactagtgta |
34581359 |
T |
|
| Q |
201 |
ttcttcaggaacaaagatcc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34581360 |
ttcttcaggaacaaagatcc |
34581379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 35125154 - 35125201
Alignment:
| Q |
31 |
ttcctaataaacgagtagctgtagatgatggaatacttgcaatattca |
78 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
35125154 |
ttcctaataaacgagcagctgaagatgatggaacacttgcaatattca |
35125201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 32602643 - 32602696
Alignment:
| Q |
21 |
ttgttgttacttcctaataaacgagtagctgtagatgatggaatacttgcaata |
74 |
Q |
| |
|
|||||||| |||||||||| |||| ||||| ||||||||||| |||||||||| |
|
|
| T |
32602643 |
ttgttgttgtttcctaataatcgagcagctgaagatgatggaacacttgcaata |
32602696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University