View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_108 (Length: 236)

Name: NF1705_high_108
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_108
NF1705_high_108
[»] chr4 (23 HSPs)
chr4 (17-131)||(39503242-39503356)
chr4 (131-221)||(35091228-35091318)
chr4 (131-221)||(35096341-35096431)
chr4 (129-221)||(32429032-32429124)
chr4 (131-221)||(3424114-3424203)
chr4 (131-208)||(34279254-34279331)
chr4 (131-188)||(22119073-22119130)
chr4 (140-213)||(54858987-54859060)
chr4 (131-187)||(47071758-47071814)
chr4 (131-187)||(14643526-14643582)
chr4 (173-221)||(18716853-18716901)
chr4 (173-221)||(18737526-18737574)
chr4 (130-185)||(3409328-3409383)
chr4 (178-221)||(3409396-3409439)
chr4 (131-187)||(30019638-30019692)
chr4 (182-221)||(18671203-18671242)
chr4 (131-189)||(25618050-25618108)
chr4 (131-187)||(34601825-34601881)
chr4 (131-213)||(34128122-34128205)
chr4 (135-173)||(18716920-18716958)
chr4 (135-173)||(18737596-18737634)
chr4 (173-213)||(14643588-14643628)
chr4 (173-213)||(30019698-30019738)
[»] chr8 (11 HSPs)
chr8 (130-221)||(26981675-26981766)
chr8 (131-221)||(14318416-14318506)
chr8 (131-221)||(26986790-26986880)
chr8 (131-221)||(34108544-34108634)
chr8 (130-221)||(18493977-18494068)
chr8 (131-221)||(14314712-14314802)
chr8 (131-212)||(43956651-43956732)
chr8 (173-221)||(10340760-10340808)
chr8 (131-176)||(10340698-10340743)
chr8 (134-176)||(18608435-18608477)
chr8 (131-187)||(1782181-1782237)
[»] chr5 (12 HSPs)
chr5 (130-221)||(9872224-9872315)
chr5 (131-221)||(9877340-9877430)
chr5 (131-221)||(39904158-39904248)
chr5 (131-221)||(39909271-39909361)
chr5 (130-213)||(13556104-13556187)
chr5 (131-182)||(4555967-4556018)
chr5 (136-211)||(24091794-24091869)
chr5 (131-176)||(2024422-2024467)
chr5 (173-221)||(2024357-2024405)
chr5 (131-187)||(43540564-43540620)
chr5 (131-188)||(35368623-35368680)
chr5 (167-221)||(4555908-4555962)
[»] chr2 (10 HSPs)
chr2 (130-221)||(14917182-14917273)
chr2 (129-221)||(39178912-39179004)
chr2 (131-221)||(17720000-17720090)
chr2 (131-221)||(17720327-17720417)
chr2 (131-221)||(45120700-45120790)
chr2 (131-221)||(30283251-30283341)
chr2 (131-185)||(42780542-42780596)
chr2 (173-216)||(20892160-20892203)
chr2 (131-213)||(716634-716715)
chr2 (169-213)||(42780494-42780538)
[»] chr7 (11 HSPs)
chr7 (131-221)||(12857102-12857192)
chr7 (131-221)||(26051334-26051424)
chr7 (131-221)||(26056447-26056537)
chr7 (131-221)||(26060693-26060783)
chr7 (131-221)||(26065806-26065896)
chr7 (131-221)||(12851989-12852079)
chr7 (169-221)||(14610642-14610694)
chr7 (131-185)||(4181276-4181330)
chr7 (131-187)||(2248853-2248909)
chr7 (131-179)||(35352121-35352169)
chr7 (131-187)||(37459703-37459759)
[»] chr6 (7 HSPs)
chr6 (131-221)||(21276086-21276176)
chr6 (131-208)||(20751881-20751957)
chr6 (132-216)||(11182989-11183073)
chr6 (131-187)||(21936408-21936464)
chr6 (133-187)||(12909621-12909675)
chr6 (133-187)||(12934728-12934782)
chr6 (131-216)||(21937943-21938028)
[»] chr3 (24 HSPs)
chr3 (131-221)||(4050121-4050211)
chr3 (131-221)||(4055255-4055345)
chr3 (131-221)||(5481289-5481379)
chr3 (131-221)||(6852753-6852843)
chr3 (131-221)||(6857856-6857946)
chr3 (131-221)||(8465063-8465153)
chr3 (131-221)||(10584659-10584749)
chr3 (131-221)||(10672739-10672829)
chr3 (131-221)||(10677852-10677942)
chr3 (131-221)||(8458625-8458715)
chr3 (135-221)||(10591100-10591186)
chr3 (131-221)||(31081308-31081398)
chr3 (131-221)||(33702400-33702490)
chr3 (130-221)||(31076200-31076291)
chr3 (131-221)||(1302045-1302135)
chr3 (131-221)||(269490-269580)
chr3 (131-221)||(5457817-5457902)
chr3 (131-221)||(49784859-49784949)
chr3 (133-221)||(20891462-20891550)
chr3 (131-187)||(29827829-29827885)
chr3 (131-182)||(18023914-18023965)
chr3 (133-185)||(18023324-18023376)
chr3 (131-221)||(3187246-3187336)
chr3 (178-221)||(18023982-18024025)
[»] chr1 (20 HSPs)
chr1 (131-221)||(28574610-28574700)
chr1 (131-221)||(28598622-28598712)
chr1 (131-221)||(3468381-3468471)
chr1 (131-221)||(43359115-43359205)
chr1 (131-208)||(16051511-16051588)
chr1 (132-187)||(17414304-17414359)
chr1 (159-221)||(3701293-3701355)
chr1 (133-187)||(13654676-13654730)
chr1 (133-187)||(35653036-35653090)
chr1 (142-187)||(10186056-10186101)
chr1 (131-187)||(1188333-1188389)
chr1 (135-187)||(10186307-10186359)
chr1 (131-185)||(3696111-3696165)
chr1 (137-187)||(19311180-19311230)
chr1 (131-188)||(21430777-21430833)
chr1 (131-184)||(35626539-35626591)
chr1 (169-221)||(17414361-17414413)
chr1 (144-187)||(1188178-1188221)
chr1 (167-221)||(3696167-3696221)
chr1 (173-213)||(19311134-19311174)
[»] scaffold0223 (1 HSPs)
scaffold0223 (131-217)||(1820-1906)
[»] scaffold0006 (1 HSPs)
scaffold0006 (133-187)||(144437-144491)
[»] scaffold0005 (2 HSPs)
scaffold0005 (131-187)||(173710-173766)
scaffold0005 (173-213)||(173664-173704)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 39503356 - 39503242
Alignment:
Q  17 catagggaataccgttcttcttaaaaattgaattgcagcttgcaatgaagatcttattcctatcactcattcactcctttttattctactaaatttctac 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39503356 catagggaatacccttcttcttaaaaattgaattgcagcttgcaatgaagatcttattcctatcactcattcactcctttttcttctactaaatttctac 39503257  T
Q  117 aatagagtttggact 131  Q
    ||||| |||||||||    
T  39503256 aatagggtttggact 39503242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 35091318 - 35091228
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35091318 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 35091228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 35096431 - 35096341
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35096431 tgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 35096341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 32429032 - 32429124
Alignment:
Q  129 actgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| || |||||||||||||||||||||||||||    
T  32429032 actgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatggaaatcattcatatacattggaacattattat 32429124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 3424114 - 3424203
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  3424114 tgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaacca-tcatatacattggaacattattat 3424203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 34279254 - 34279331
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacatt 208  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||| ||||||||||||||    
T  34279254 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtttcaattcttcatgggaatcattcatatacatt 34279331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 22119130 - 22119073
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 188  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  22119130 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcat 22119073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 54858987 - 54859060
Alignment:
Q  140 tttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaac 213  Q
    ||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| |||||||||||||||||||    
T  54858987 tttccaaaataatagaatcactttacaaccaaaaattgtaactcttcattggaatcattcatatacattggaac 54859060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 47071814 - 47071758
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  47071814 tgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttca 47071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 14643526 - 14643582
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 14643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 18716901 - 18716853
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  18716901 agttgtaactcttcatgggaaccattcatatacattggtacattattat 18716853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 18737574 - 18737526
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  18737574 agttgtaactcttcatgggaaccattcatatacattggtacattattat 18737526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 3409328 - 3409383
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 185  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| | ||||||    
T  3409328 ctgttggtgatttccaaaataatggaatcactttagaactaaaagttgttactctt 3409383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 3409396 - 3409439
Alignment:
Q  178 taactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  3409396 taactcttcatgagaaccattcatatacattggaacattattat 3409439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 30019638 - 30019692
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||    
T  30019638 tgttggtgatttctaaaataatggaatcactttagaatc--aagttgtaactcttca 30019692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 18671242 - 18671203
Alignment:
Q  182 tcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  18671242 tcttcatgggaaccattcatatacattggtacattattat 18671203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 25618050 - 25618108
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatg 189  Q
    |||||||||||||||||||| ||||||||||||||||  || |||| ||||| ||||||    
T  25618050 tgttggtgatttccaaaatattggaatcactttagaactaagagttgtaactgttcatg 25618108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 34601825 - 34601881
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||||| ||||| ||||    
T  34601825 tgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttca 34601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 34128122 - 34128205
Alignment:
Q  131 tgttggtgatttcc-aaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||||||||||||| ||||| ||||||||| ||||||| |||||||| |||||||   || ||| | |||||||| ||||||||    
T  34128122 tgttggtgatttccaaaaattatggaatcattttagaaccaaaagttgtaactctctgtgagaatctttcatatatattggaac 34128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 18716958 - 18716920
Alignment:
Q  135 ggtgatttccaaaataatggaatcactttagaatcaaaa 173  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 18737634 - 18737596
Alignment:
Q  135 ggtgatttccaaaataatggaatcactttagaatcaaaa 173  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18737596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 14643588 - 14643628
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  14643588 agttgtaactattcatgggaatcattcatatacattggaac 14643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 30019698 - 30019738
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  30019698 agttgtaactcttcatgggaatctttcatatacattggaac 30019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 26981675 - 26981766
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26981675 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26981766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14318416 - 14318506
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14318416 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 14318506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 26986790 - 26986880
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26986790 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26986880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 34108634 - 34108544
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34108634 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 34108544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 18493977 - 18494068
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18493977 ctgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 18494068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 14314712 - 14314802
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  14314712 tgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactcttaatgggaaccattcgtatacattggaacattattat 14314802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 43956651 - 43956732
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaa 212  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||| || | ||||||||||||||||    
T  43956651 tgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttcatggaaatctttcatatacattggaa 43956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 10340760 - 10340808
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  10340760 agttgtaactcttcatggaaaccattcatatacattggaacattattat 10340808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 10340698 - 10340743
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagtt 176  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||    
T  10340698 tgttggtgatttcccaaataatggaatcactttagaaccaaaagtt 10340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 18608435 - 18608477
Alignment:
Q  134 tggtgatttccaaaataatggaatcactttagaatcaaaagtt 176  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagtt 18608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 1782237 - 1782181
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||| |||||| ||||||||||||| | |||||||  ||||||||||||||||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttca 1782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 9872224 - 9872315
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9872224 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 9872315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 9877340 - 9877430
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9877340 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 9877430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 39904248 - 39904158
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39904248 tgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 39904158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 39909361 - 39909271
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||  ||||||||||||||||||||||||||||||    
T  39909361 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattat 39909271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 13556104 - 13556187
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaac 213  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||| | |||||||||||||||||    
T  13556104 ctgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttcatgggaatctttcatatacattggaac 13556187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 4556018 - 4555967
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataact 182  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4556018 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaact 4555967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 24091794 - 24091869
Alignment:
Q  136 gtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattgga 211  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||||||| ||| ||| | |||||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 2024467 - 2024422
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagtt 176  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  2024467 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 2024422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2024405 - 2024357
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  2024405 agttgtaactcttcacgggaaccattcatatacattggaacattattat 2024357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 43540564 - 43540620
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||    
T  43540564 tgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttca 43540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 35368623 - 35368680
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 188  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||||    
T  35368623 tgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcat 35368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 4555962 - 4555908
Alignment:
Q  167 atcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||| ||||||| || || ||||||||||||||| || ||||||||    
T  4555962 atcaaaagttatacctcttcacggaaatcattcatatacattgaaaaattattat 4555908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 14917182 - 14917273
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14917182 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 14917273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 39179004 - 39178912
Alignment:
Q  129 actgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39179004 actgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 39178912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 17720000 - 17720090
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  17720000 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaactattcatatacattggaacattattat 17720090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 17720327 - 17720417
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17720327 tgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 17720417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 45120790 - 45120700
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttcatgggaaccattcatatacattgaaacattattat 45120700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 30283251 - 30283341
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30283251 tgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttcatgggaaccattcatgtacattggaacattattat 30283341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 42780596 - 42780542
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  42780596 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactctt 42780542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 20892160 - 20892203
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaacatt 216  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  20892160 agttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 716715 - 716634
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaac 213  Q
    ||||| ||||||  ||||||||||||||| |||||| | ||||||| |||||||| ||| ||| | |||||||||||||||||    
T  716715 tgttgatgatttttaaaataatggaatcattttagatt-aaaagttgtaactctttatgtgaatctttcatatacattggaac 716634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 42780538 - 42780494
Alignment:
Q  169 caaaagttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||||||| |||||||||||| ||| | |||||||||||||||||    
T  42780538 caaaagttgtaactcttcatgagaatctttcatatacattggaac 42780494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 12857192 - 12857102
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12857192 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 12857102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 26051424 - 26051334
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26051424 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26051334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 26056537 - 26056447
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26056537 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 26060783 - 26060693
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26060783 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26060693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 26065896 - 26065806
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26065896 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 26065806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 12852079 - 12851989
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  12852079 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattgttacattattat 12851989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 14610694 - 14610642
Alignment:
Q  169 caaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14610694 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 14610642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 185  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 2248853 - 2248909
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  ||||||||||    
T  2248853 tgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttca 2248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 35352121 - 35352169
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttata 179  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  35352121 tgttggtgatttccgaaataatgaaattactttagaatcaaaagttata 35352169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 37459703 - 37459759
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||| |||||||  |||||||||||||||||||| ||||||||||| ||||||||||    
T  37459703 tgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttca 37459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 21276176 - 21276086
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21276176 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 21276086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 20751881 - 20751957
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacatt 208  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||| ||||||||||||    
T  20751881 tgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttcatgagaacctttcatatacatt 20751957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 11182989 - 11183073
Alignment:
Q  132 gttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatt 216  Q
    |||||| ||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||| || | ||||||||||||||||||||    
T  11182989 gttggtcatttctaaaataatggaatcaatttagaaccaaatgttgtaactcttcatggaaatctttcatatacattggaacatt 11183073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 21936408 - 21936464
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 12909675 - 12909621
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttca 12909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 12934782 - 12934728
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttca 12934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 21938028 - 21937943
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatt 216  Q
    ||||||||||||||||||||||||||||| ||||||| || ||  | ||||||||||||  ||   ||| ||||||||||||||||    
T  21938028 tgttggtgatttccaaaataatggaatcattttagaaccataatatgtaactcttcatgaaaatatttcgtatacattggaacatt 21937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4050211 - 4050121
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4050211 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 4050121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4055345 - 4055255
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4055345 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 4055255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 5481289 - 5481379
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5481289 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 5481379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 6852753 - 6852843
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6852753 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 6852843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 6857856 - 6857946
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6857856 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 6857946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 8465153 - 8465063
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8465153 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 8465063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 10584659 - 10584749
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10584659 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 10584749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 10672739 - 10672829
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10672739 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 10672829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 10677852 - 10677942
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10677852 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 10677942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 8458715 - 8458625
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8458715 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 8458625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 10591100 - 10591186
Alignment:
Q  135 ggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10591100 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 10591186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 31081308 - 31081398
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  31081308 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatgggaaccattcatatacattggaacattattat 31081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 33702400 - 33702490
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  33702400 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacataggaacattattat 33702490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 31076200 - 31076291
Alignment:
Q  130 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  31076200 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatggaaaccattcatatacattggaacattattat 31076291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 1302045 - 1302135
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  1302045 tgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatatattggaacattattat 1302135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 269580 - 269490
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||||| ||||||||||||||||    
T  269580 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctttatggaaaccattcatatatattggaacattattat 269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 5457817 - 5457902
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5457817 tgttggtgatttccaaaataatggaat-----tagaatcaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 5457902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 49784949 - 49784859
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||| || |||||||||||||||||||||||||||    
T  49784949 tgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttcatggaaatcattcatatacattggaacattattat 49784859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 20891550 - 20891462
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| || ||||||||    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattat 20891462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 29827885 - 29827829
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  29827885 tgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttca 29827829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 18023914 - 18023965
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataact 182  Q
    |||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  18023914 tgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaact 18023965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 18023324 - 18023376
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 185  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||| ||||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaattgaaagttgtaagtctt 18023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 3187246 - 3187336
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||| |||||||  |||| ||| ||||||||||| ||||||||||| ||| | || ||| ||| ||||||||| |||||||||| ||||||    
T  3187246 tgtttgtgatttttaaaacaattgaatcactttaaaatcaaaagttgtaattttttatgagaatcattcatatgcattggaacaatattat 3187336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 18023982 - 18024025
Alignment:
Q  178 taactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||| |||| || ||||||||||||||||||||||||    
T  18023982 taactcttcataggaatcaatcatatacattggaacattattat 18024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 28574700 - 28574610
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28574700 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 28574610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 28598712 - 28598622
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28598712 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattat 28598622  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 3468471 - 3468381
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  3468471 tgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttcataggaaccattcatatacattggaacattattat 3468381  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 43359205 - 43359115
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  43359205 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatgagaatcattcatatacattggaacattattat 43359115  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 16051588 - 16051511
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacatt 208  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  16051588 tgttggtgatttctaaaataatggaatcactttagaaccaaaagttataactctttatgggaatcattcatatacatt 16051511  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 17414304 - 17414359
Alignment:
Q  132 gttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttca 17414359  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 3701293 - 3701355
Alignment:
Q  159 actttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||    
T  3701293 actttagaaccaaaagttgtaactctttataggaaccattcatatacattagaacattattat 3701355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 13654730 - 13654676
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 13654676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 35653036 - 35653090
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttca 35653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 10186101 - 10186056
Alignment:
Q  142 tccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10186101 tccaaaataatggaatcactttagaatcaaaagttgtaactcttca 10186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 1188389 - 1188333
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttca 1188333  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 10186307 - 10186359
Alignment:
Q  135 ggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttca 10186359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3696111 - 3696165
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 185  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  3696111 tgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctt 3696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 19311230 - 19311180
Alignment:
Q  137 tgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttca 19311180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 21430777 - 21430833
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 188  Q
    |||||||||||| ||||||||| |||||| ||||| |||||||||| |||||||||||    
T  21430777 tgttggtgattttcaaaataatagaatcattttag-atcaaaagttgtaactcttcat 21430833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 35626591 - 35626539
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactct 184  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| || |||||||    
T  35626591 tgttggtgatttctaaaataatggaatcactttag-atcaaaaattgtaactct 35626539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 17414361 - 17414413
Alignment:
Q  169 caaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    |||||||| |||||||||||  ||| |||||||||||||| ||||||||||||    
T  17414361 caaaagttgtaactcttcattagaatcattcatatacattagaacattattat 17414413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 1188221 - 1188178
Alignment:
Q  144 caaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttca 1188178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 3696167 - 3696221
Alignment:
Q  167 atcaaaagttataactcttcatgggaaccattcatatacattggaacattattat 221  Q
    ||||||||||  |||| |||||||||| ||||||||||||||  |||||||||||    
T  3696167 atcaaaagttgcaacttttcatgggaatcattcatatacattaaaacattattat 3696221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 19311174 - 19311134
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  19311174 agttgtaactcttcatgggaatctttcatatacattggaac 19311134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 1820 - 1906
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatta 217  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  1820 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttcatgggaaccattcatatacattggaacatta 1906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 144491 - 144437
Alignment:
Q  133 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 173766 - 173710
Alignment:
Q  131 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 187  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 173704 - 173664
Alignment:
Q  173 agttataactcttcatgggaaccattcatatacattggaac 213  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  173704 agttgtaactattcatgggaatcattcatatacattggaac 173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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