View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_112 (Length: 230)
Name: NF1705_high_112
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_112 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 33399776 - 33399554
Alignment:
| Q |
8 |
gcagaacctgtgttaacaagtggacatgataaaattgcattgacaacctttgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggac |
107 |
Q |
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| T |
33399776 |
gcagcaccagtgttaacaagtggacatgataaaattgcattgacaacctatgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggac |
33399677 |
T |
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| Q |
108 |
aaaagcttttcataaatgttttgccaaaacaagatggttggtatccagcaccctcctcaccttcagcctccccctcaccctcacctgtgccggcccctga |
207 |
Q |
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| T |
33399676 |
aaaagcttttcataaatgttttaccaaaacaagatggttggtatccagcaccctcctcaccttcagcctccccctcaccctcacctgtgccggcccctga |
33399577 |
T |
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| Q |
208 |
agcagcaccgccttcaaatgcac |
230 |
Q |
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| T |
33399576 |
agcagcaccgccttcaaatgcac |
33399554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 33395880 - 33395672
Alignment:
| Q |
17 |
gtgttaacaagtggacatgataaaattgcattgacaacctttgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggacaaaagcttt |
116 |
Q |
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| T |
33395880 |
gtgttaactagtggacatgatacaattttattgacaacctatggaagaagatggtacatttcaggtgctgctcatcactgcaatcttggccaaaagcttt |
33395781 |
T |
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| Q |
117 |
tcataaatgttttgccaaaacaagatggttggtatccagcaccctcctcaccttcagcctccccctcaccctcacctgtgccggcccctgaagcagcacc |
216 |
Q |
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| T |
33395780 |
tcataaacgtgcagccaccacagtttggttggtctccagtaccctc---accttcagcctccccgtcaccctcacctgtgccgactcctgaagcagcacc |
33395684 |
T |
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| Q |
217 |
gccttcaaatgc |
228 |
Q |
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| T |
33395683 |
accttcaaatgc |
33395672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 33442087 - 33441945
Alignment:
| Q |
13 |
acctgtgttaacaagtggacatgataaaattgcattgacaacctttgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggacaaaag |
112 |
Q |
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| T |
33442087 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33441988 |
T |
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| Q |
113 |
cttttcataaatgttttgccaaaacaagatggttggtatccag |
155 |
Q |
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| T |
33441987 |
cttttcataactgtgcagccaaaacaagatggttggtctccag |
33441945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 33452307 - 33452165
Alignment:
| Q |
13 |
acctgtgttaacaagtggacatgataaaattgcattgacaacctttgggagaagatggtacatttcaggtgttgccaatcactgcgaaaatggacaaaag |
112 |
Q |
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| T |
33452307 |
acctgtgttaaccagtgggcaagacaaaattataattacaacctatgggagaagatggtacatttcaagtgttaccgatcactgcgaaaatggacaaaag |
33452208 |
T |
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| Q |
113 |
cttttcataaatgttttgccaaaacaagatggttggtatccag |
155 |
Q |
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| T |
33452207 |
cttttcataactgtgcagccaaaacaagatggttggtctccag |
33452165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 33395622 - 33395571
Alignment:
| Q |
179 |
ccctcaccctcacctgtgccggcccctgaagcagcaccgccttcaaatgcac |
230 |
Q |
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| T |
33395622 |
ccctcaccctcacctacaccggcccatgaagcagcaccgtcttcaaatgcac |
33395571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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