View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_119 (Length: 223)

Name: NF1705_high_119
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_119
NF1705_high_119
[»] chr3 (33 HSPs)
chr3 (50-201)||(861848-861999)
chr3 (93-162)||(4288315-4288384)
chr3 (17-56)||(45307110-45307149)
chr3 (17-51)||(44317633-44317667)
chr3 (17-49)||(4773243-4773275)
chr3 (17-49)||(18464874-18464906)
chr3 (17-49)||(27801907-27801939)
chr3 (17-49)||(39664184-39664216)
chr3 (17-49)||(49528149-49528181)
chr3 (17-49)||(51509119-51509151)
chr3 (17-52)||(10506366-10506401)
chr3 (17-52)||(26318179-26318214)
chr3 (17-59)||(11256093-11256135)
chr3 (19-49)||(22152267-22152297)
chr3 (17-51)||(22202034-22202068)
chr3 (17-51)||(47669677-47669711)
chr3 (17-47)||(54752581-54752611)
chr3 (17-46)||(10505951-10505980)
chr3 (17-46)||(13866023-13866052)
chr3 (17-50)||(24428985-24429018)
chr3 (17-50)||(28985508-28985541)
chr3 (17-50)||(42591783-42591816)
chr3 (17-46)||(44894158-44894187)
chr3 (17-50)||(54108320-54108353)
chr3 (17-49)||(1994169-1994201)
chr3 (17-49)||(1999328-1999360)
chr3 (17-49)||(4757494-4757526)
chr3 (17-49)||(4757911-4757943)
chr3 (17-45)||(11256521-11256549)
chr3 (17-49)||(21569163-21569195)
chr3 (17-49)||(30681835-30681867)
chr3 (17-49)||(42592202-42592234)
chr3 (17-49)||(53716711-53716743)
[»] chr7 (21 HSPs)
chr7 (92-204)||(2478618-2478731)
chr7 (93-204)||(23103086-23103198)
chr7 (17-52)||(17749932-17749967)
chr7 (17-51)||(35146697-35146731)
chr7 (17-57)||(4155589-4155630)
chr7 (93-162)||(16803075-16803144)
chr7 (17-49)||(21391190-21391222)
chr7 (17-49)||(29277761-29277793)
chr7 (17-49)||(48626063-48626095)
chr7 (17-52)||(1114463-1114498)
chr7 (17-48)||(19681496-19681527)
chr7 (17-51)||(7578870-7578904)
chr7 (17-54)||(10526306-10526343)
chr7 (89-146)||(26573348-26573405)
chr7 (17-49)||(6356703-6356735)
chr7 (17-49)||(6356765-6356797)
chr7 (17-49)||(8416485-8416517)
chr7 (17-49)||(31075611-31075643)
chr7 (17-49)||(36423818-36423850)
chr7 (17-49)||(41453005-41453037)
chr7 (17-49)||(48626481-48626513)
[»] chr1 (20 HSPs)
chr1 (89-162)||(15243819-15243892)
chr1 (89-162)||(47900801-47900874)
chr1 (17-52)||(37576599-37576634)
chr1 (17-49)||(8760272-8760304)
chr1 (17-49)||(12127057-12127089)
chr1 (17-49)||(32047743-32047775)
chr1 (17-48)||(44323078-44323109)
chr1 (17-59)||(20305992-20306034)
chr1 (17-59)||(31704031-31704073)
chr1 (17-51)||(38000487-38000521)
chr1 (17-50)||(1762673-1762706)
chr1 (117-162)||(15877240-15877285)
chr1 (17-50)||(23476340-23476373)
chr1 (17-49)||(1763092-1763124)
chr1 (17-49)||(10831131-10831163)
chr1 (17-49)||(12481477-12481509)
chr1 (17-49)||(16024315-16024347)
chr1 (17-49)||(26707196-26707228)
chr1 (17-57)||(27548087-27548127)
chr1 (17-49)||(49140143-49140175)
[»] chr4 (32 HSPs)
chr4 (93-184)||(19943544-19943635)
chr4 (17-59)||(44957775-44957817)
chr4 (17-51)||(33091451-33091485)
chr4 (17-51)||(44991277-44991311)
chr4 (89-158)||(4224790-4224859)
chr4 (17-50)||(8398030-8398063)
chr4 (17-50)||(38339910-38339943)
chr4 (93-162)||(50978891-50978960)
chr4 (17-50)||(53994933-53994966)
chr4 (17-49)||(14985749-14985781)
chr4 (17-49)||(15477645-15477677)
chr4 (115-162)||(7355462-7355509)
chr4 (17-48)||(30683527-30683558)
chr4 (17-52)||(53751320-53751355)
chr4 (17-51)||(8592387-8592421)
chr4 (17-51)||(38339490-38339524)
chr4 (17-51)||(39448906-39448940)
chr4 (17-47)||(50769239-50769269)
chr4 (17-47)||(52557089-52557119)
chr4 (17-58)||(42855330-42855371)
chr4 (17-46)||(43734289-43734318)
chr4 (17-49)||(4513334-4513366)
chr4 (17-49)||(14985331-14985363)
chr4 (17-49)||(16037794-16037826)
chr4 (17-49)||(16038212-16038244)
chr4 (17-49)||(19088759-19088791)
chr4 (17-49)||(25181812-25181844)
chr4 (17-49)||(25269418-25269450)
chr4 (17-49)||(46849669-46849701)
chr4 (17-49)||(47603779-47603811)
chr4 (17-49)||(53995353-53995385)
chr4 (17-49)||(55022284-55022316)
[»] chr5 (12 HSPs)
chr5 (89-162)||(17468371-17468444)
chr5 (17-51)||(19128471-19128505)
chr5 (17-51)||(38958722-38958756)
chr5 (17-49)||(38959141-38959173)
chr5 (17-48)||(19184598-19184629)
chr5 (17-48)||(32288079-32288110)
chr5 (17-51)||(1140183-1140217)
chr5 (93-147)||(16510554-16510608)
chr5 (17-51)||(27185872-27185906)
chr5 (17-46)||(25183071-25183100)
chr5 (17-49)||(34264351-34264383)
chr5 (17-49)||(36440200-36440232)
[»] chr6 (22 HSPs)
chr6 (17-52)||(17244661-17244696)
chr6 (17-51)||(31238164-31238198)
chr6 (17-51)||(31247534-31247568)
chr6 (17-51)||(35167488-35167522)
chr6 (17-50)||(2517420-2517453)
chr6 (17-49)||(6137379-6137411)
chr6 (17-49)||(9046504-9046536)
chr6 (17-52)||(6532189-6532224)
chr6 (17-60)||(32753166-32753209)
chr6 (17-47)||(6137795-6137825)
chr6 (17-59)||(14276389-14276431)
chr6 (17-47)||(32753591-32753621)
chr6 (17-51)||(34518110-34518144)
chr6 (17-46)||(5937816-5937845)
chr6 (93-162)||(6633806-6633875)
chr6 (17-50)||(24744738-24744771)
chr6 (17-49)||(978415-978447)
chr6 (17-49)||(6235921-6235953)
chr6 (17-49)||(7271047-7271079)
chr6 (17-49)||(15932730-15932762)
chr6 (17-49)||(18053371-18053403)
chr6 (17-49)||(21856555-21856587)
[»] scaffold0526 (2 HSPs)
scaffold0526 (17-55)||(4024-4062)
scaffold0526 (17-52)||(4085-4120)
[»] chr8 (25 HSPs)
chr8 (17-51)||(34470962-34470996)
chr8 (17-51)||(45077219-45077253)
chr8 (17-49)||(1646501-1646533)
chr8 (17-49)||(24666096-24666128)
chr8 (17-57)||(37569306-37569346)
chr8 (14-49)||(45077618-45077653)
chr8 (17-59)||(1646924-1646966)
chr8 (17-47)||(5434902-5434932)
chr8 (17-51)||(12643934-12643968)
chr8 (17-47)||(15048817-15048847)
chr8 (17-51)||(15871619-15871653)
chr8 (17-51)||(45276595-45276629)
chr8 (17-46)||(1651989-1652018)
chr8 (17-46)||(1740365-1740394)
chr8 (17-50)||(27473071-27473104)
chr8 (93-162)||(30122987-30123055)
chr8 (17-46)||(40660304-40660333)
chr8 (17-45)||(1739952-1739980)
chr8 (17-49)||(1870353-1870385)
chr8 (17-49)||(11920076-11920108)
chr8 (17-49)||(15048399-15048431)
chr8 (17-57)||(15872039-15872079)
chr8 (17-49)||(22763351-22763383)
chr8 (17-49)||(24652823-24652855)
chr8 (17-49)||(33296102-33296134)
[»] scaffold0029 (2 HSPs)
scaffold0029 (17-58)||(72753-72794)
scaffold0029 (17-49)||(73179-73211)
[»] scaffold0115 (2 HSPs)
scaffold0115 (17-49)||(21512-21544)
scaffold0115 (17-49)||(22571-22603)
[»] chr2 (16 HSPs)
chr2 (17-49)||(24371967-24371999)
chr2 (17-49)||(33470341-33470373)
chr2 (93-153)||(33856535-33856595)
chr2 (115-190)||(17558880-17558955)
chr2 (17-48)||(26181701-26181732)
chr2 (17-51)||(15744865-15744899)
chr2 (17-51)||(29472240-29472274)
chr2 (17-46)||(2147888-2147917)
chr2 (17-46)||(8173888-8173917)
chr2 (17-58)||(8444813-8444854)
chr2 (17-49)||(7495980-7496012)
chr2 (17-49)||(10991851-10991883)
chr2 (17-49)||(15405756-15405788)
chr2 (17-49)||(24138068-24138100)
chr2 (17-49)||(29472660-29472692)
chr2 (17-53)||(34735761-34735797)
[»] scaffold0186 (2 HSPs)
scaffold0186 (17-55)||(24580-24618)
scaffold0186 (17-49)||(24162-24194)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-50)||(113784-113817)
[»] scaffold0221 (1 HSPs)
scaffold0221 (17-49)||(8429-8461)
[»] scaffold0134 (2 HSPs)
scaffold0134 (17-49)||(14135-14167)
scaffold0134 (17-49)||(14553-14585)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 861848 - 861999
Alignment:
Q  50 aattttttatcggcttgcataaggtatatcctatttaagtgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggc 149  Q
    |||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  861848 aattttttattggcttgcatcaggtctatcctatttaagtataggttatcatgttgcacttatctcccataatgaacgagaaattgaatgaatgcatggc 861947  T
Q  150 ctaaagcatctaaagaatgtctattcatgattttatggtttaattcgttttt 201  Q
    |||||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  861948 ctaaagcatctaaacaatgtctattcaagattttatggtttaattagttttt 861999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 4288384 - 4288315
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||| ||||||||| ||||||||||||||| ||||| ||| ||||||||| |||||||||||||||    
T  4288384 ggttatcacgttgcacttatctcccataatgaacaagaaactgagtgaatgcattgcctaaagcatctaa 4288315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 45307110 - 45307149
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttt 56  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  45307110 aaatagttagaggaccaaaaaggtaattaagccatttttt 45307149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 44317633 - 44317667
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  44317633 aaatagttagaggaccaaaaaggtaattaagccaa 44317667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 4773275 - 4773243
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  4773275 aaatagttagaggaccaaaaaggtaattaagcc 4773243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 18464874 - 18464906
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  18464874 aaatagttagaggaccaaaaaggtaattaagcc 18464906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 27801907 - 27801939
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  27801907 aaatagttagaggaccaaaaaggtaattaagcc 27801939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 39664216 - 39664184
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  39664216 aaatagttagaggaccaaaaaggtaattaagcc 39664184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 49528181 - 49528149
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  49528181 aaatagttagaggaccaaaaaggtaattaagcc 49528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 51509151 - 51509119
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  51509151 aaatagttagaggaccaaaaaggtaattaagcc 51509119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 10506366 - 10506401
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    |||||||||||||||||||||||||||| |||||||    
T  10506366 aaatagttagaggaccaaaaaggtaatttagccaat 10506401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26318214 - 26318179
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26318214 aaatagttagaggactaaaaaggtaattaagccaat 26318179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 11256135 - 11256093
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    ||||||||||||||| ||||||||||||||||| | |||||||    
T  11256135 aaatagttagaggactaaaaaggtaattaagcctaatttttat 11256093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 22152267 - 22152297
Alignment:
Q  19 atagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||    
T  22152267 atagttagaggaccaaaaaggtaattaagcc 22152297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 22202034 - 22202068
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||| ||||||||||||    
T  22202034 aaatagttagaggaccaaaaagataattaagccaa 22202068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 47669677 - 47669711
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||| ||||||||||||    
T  47669677 aaatagttagaggaccaaaaagataattaagccaa 47669711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 54752581 - 54752611
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  54752581 aaatagttagaggaccaaaaaggtaattaag 54752611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 10505980 - 10505951
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  10505980 aaatagttagaggaccaaaaaggtaattaa 10505951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 13866052 - 13866023
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  13866052 aaatagttagaggaccaaaaaggtaattaa 13866023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 24428985 - 24429018
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||| ||||||||||||||||||||||    
T  24428985 aaatagttagatgaccaaaaaggtaattaagcca 24429018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 28985541 - 28985508
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    |||||||||||||||||||| |||||||||||||    
T  28985541 aaatagttagaggaccaaaagggtaattaagcca 28985508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 42591816 - 42591783
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    |||||||||||||||||||||||||||| |||||    
T  42591816 aaatagttagaggaccaaaaaggtaatttagcca 42591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 44894158 - 44894187
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  44894158 aaatagttagaggaccaaaaaggtaattaa 44894187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 54108320 - 54108353
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    |||||||||||||||||||||||||||| |||||    
T  54108320 aaatagttagaggaccaaaaaggtaatttagcca 54108353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 1994201 - 1994169
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  1994201 aaatagttagaggaccaaaaatgtaattaagcc 1994169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 1999360 - 1999328
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  1999360 aaatagttagaggaccaaaaatgtaattaagcc 1999328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 4757526 - 4757494
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  4757526 aaatagttagaggaccaaaaatgtaattaagcc 4757494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 4757911 - 4757943
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  4757911 aaatagttagaggaccaaaaatgtaattaagcc 4757943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 11256521 - 11256549
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaatta 45  Q
    |||||||||||||||||||||||||||||    
T  11256521 aaatagttagaggaccaaaaaggtaatta 11256549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 21569163 - 21569195
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||||||||| |||||    
T  21569163 aaatagttagaggaccaaaaaggtaatcaagcc 21569195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 30681835 - 30681867
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||| ||||||||||    
T  30681835 aaatagttagaggaccaaaaagataattaagcc 30681867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 42592202 - 42592234
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  42592202 aaatagttagaggaccaaaaatgtaattaagcc 42592234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 53716711 - 53716743
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||| |||||||||||||||||||||    
T  53716711 aaatagttagatgaccaaaaaggtaattaagcc 53716743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 2478731 - 2478618
Alignment:
Q  92 aggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaaagaatgtctattcatgattttatgg-ttt 190  Q
    ||||||||||||||||||| || |||||||||||| ||||||| | |||||||||| |||||| |||||||  | || ||||| | || ||||||| |||    
T  2478731 aggttatcatgttgcacttatcccccataatgaacaagaaattaagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatggtttt 2478632  T
Q  191 aattcgtttttagt 204  Q
    |||| |||||||||    
T  2478631 aattagtttttagt 2478618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 23103086 - 23103198
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaaagaatgtctattcatgattttat-ggttta 191  Q
    |||||||||||||||||| || |||||||| ||| ||||| ||| ||||||||  | |||||||||||||  | || ||||| | |||||||| | ||||    
T  23103086 ggttatcatgttgcacttatcccccataattaacaagaaaatgagtgaatgcaatgtctaaagcatctaattagtgcctatttaggattttatagtttta 23103185  T
Q  192 attcgtttttagt 204  Q
    ||| |||||||||    
T  23103186 attagtttttagt 23103198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 17749967 - 17749932
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  17749967 aaatagttagaggaccaaaaaggtaattaagccaat 17749932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 35146731 - 35146697
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  35146731 aaatagttagaggaccaaaaaggtaattaagccaa 35146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 4155630 - 4155589
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc-aatttttt 57  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  4155630 aaatagttagaggaccaaaaaggtaattaagcctaatttttt 4155589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 16803075 - 16803144
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||| ||||||||| ||  ||||||||||||| ||||||| |||||||| ||||||| | ||||||    
T  16803075 ggttatcacgttgcacttatcctccataatgaacgataaattgagtgaatgcaaggcctaaggaatctaa 16803144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 21391222 - 21391190
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  21391222 aaatagttagaggaccaaaaaggtaattaagcc 21391190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 29277761 - 29277793
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  29277761 aaatagttagaggaccaaaaaggtaattaagcc 29277793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 48626095 - 48626063
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  48626095 aaatagttagaggaccaaaaaggtaattaagcc 48626063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 1114463 - 1114498
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1114463 aaatagttagaggaccaaaaatgtaattaagccaat 1114498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 19681527 - 19681496
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  19681527 aaatagttagaggaccaaaaaggtaattaagc 19681496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 7578904 - 7578870
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||||||||||||||| |||||||||||||    
T  7578904 aaatagttagaggaccaaaaaagtaattaagccaa 7578870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 10526343 - 10526306
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattt 54  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  10526343 aaatagttagaggaccaaaaaggtaatttagcctattt 10526306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 26573405 - 26573348
Alignment:
Q  89 tgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcat 146  Q
    |||||||||||| |||||| || ||  ||| ||||||||||||||||| |||||||||    
T  26573405 tgtaggttatcacgttgcaattatcctccaaaatgaacgagaaattgagtgaatgcat 26573348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 6356703 - 6356735
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||| |||||||||||||||||||||||    
T  6356703 aaatagttataggaccaaaaaggtaattaagcc 6356735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6356797 - 6356765
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  6356797 aaatagttagaggaccaaaaaggtaatttagcc 6356765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 8416517 - 8416485
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  8416517 aaatagttagaggaccaaaaaggtaatttagcc 8416485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 31075611 - 31075643
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||| ||||||||||    
T  31075611 aaatagttagaggaccaaaaagataattaagcc 31075643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 36423818 - 36423850
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  36423818 aaatagttagaggaccaaaaaggtaatttagcc 36423850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 41453037 - 41453005
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  41453037 aaatagttagaggaccaaaaatgtaattaagcc 41453005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 48626481 - 48626513
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  48626481 aaatagttagaggaccaaaaaggtaatttagcc 48626513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 15243819 - 15243892
Alignment:
Q  89 tgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||||||||||| ||||| || |||||||||||| ||||||||| |||||||||| |||||| |||||||    
T  15243819 tgtaggttatcatgttacacttatcccccataatgaacaagaaattgagtgaatgcatgacctaaaacatctaa 15243892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 47900874 - 47900801
Alignment:
Q  89 tgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||||||| ||||||||| || || ||||||||||||||| ||| ||||||||||  ||||| |||||||    
T  47900874 tgtaggttatcacgttgcacttatcccctataatgaacgagaaaatgagtgaatgcatgaactaaaacatctaa 47900801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 37576599 - 37576634
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  37576599 aaatagttagaggaccaaaaaggtaattaagccaat 37576634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 8760304 - 8760272
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  8760304 aaatagttagaggaccaaaaaggtaattaagcc 8760272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 12127089 - 12127057
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  12127089 aaatagttagaggaccaaaaaggtaattaagcc 12127057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 32047775 - 32047743
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  32047775 aaatagttagaggaccaaaaaggtaattaagcc 32047743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 44323078 - 44323109
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  44323078 aaatagttagaggaccaaaaaggtaattaagc 44323109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 20306034 - 20305992
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    |||||||||||||||||||||||||||||| || || ||||||    
T  20306034 aaatagttagaggaccaaaaaggtaattaaacctatattttat 20305992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 31704031 - 31704073
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    ||||||||||||||||||||| |||||||||||| || |||||    
T  31704031 aaatagttagaggaccaaaaatgtaattaagccatttatttat 31704073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 38000521 - 38000487
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  38000521 aaatagttagaggaccaaaaaggtaattaaaccaa 38000487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 1762706 - 1762673
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  1762706 aaatagttagaggaccaaaaaagtaattaagcca 1762673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 15877240 - 15877285
Alignment:
Q  117 cataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||||| | ||||| ||||||||||| |||||||||||||||    
T  15877240 cataatgaacaataaatttaatgaatgcattgcctaaagcatctaa 15877285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 23476373 - 23476340
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  23476373 aaatagttagaggaccaaaaaagtaattaagcca 23476340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 1763092 - 1763124
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  1763092 aaatagttagaggaccaaaaaggtaatttagcc 1763124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 10831163 - 10831131
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  10831163 aaatagttagaggaccaaaaaggtaatttagcc 10831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 12481477 - 12481509
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  12481477 aaatagttagaggaccaaaaaggtaatttagcc 12481509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 16024315 - 16024347
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  16024315 aaatagttagaggaccaaaaaagtaattaagcc 16024347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 26707228 - 26707196
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||||||| |||||||    
T  26707228 aaatagttagaggaccaaaaaggtatttaagcc 26707196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 27548087 - 27548127
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttt 57  Q
    ||||||||||||||| |||||||||||| ||||| ||||||    
T  27548087 aaatagttagaggacaaaaaaggtaatttagccattttttt 27548127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 49140175 - 49140143
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||| ||||||||||    
T  49140175 aaatagttagaggaccaaaaagataattaagcc 49140143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 19943635 - 19943544
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaaagaatgtctattcatgatttta 184  Q
    |||||||||||||||||| |||||||||||||||||| |||||| | |||||||| |||||| ||| |||  | |||||||| | |||||||    
T  19943635 ggttatcatgttgcacttatctcccataatgaacgaggaattgagtaaatgcatgacctaaaacatataatcagtgtctatttaggatttta 19943544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 44957775 - 44957817
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44957775 aaatagttagaggaccaaaaaggtaattaagccaattttttat 44957817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 33091485 - 33091451
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  33091485 aaatagttagaggaccaaaaaggtaattaagccaa 33091451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 44991311 - 44991277
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  44991311 aaatagttagaggaccaaaaaggtaattaagccaa 44991277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 4224790 - 4224859
Alignment:
Q  89 tgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcat 158  Q
    ||||| |||||||||||||||  ||  ||||||||||| ||||| ||| |||||||||| ||||||||||    
T  4224790 tgtagattatcatgttgcactcatcatccataatgaacaagaaactgagtgaatgcatgacctaaagcat 4224859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 8398063 - 8398030
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||||||||||||||||    
T  8398063 aaatagttagaggaccaaaaaggtaattaagcca 8398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 38339910 - 38339943
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||||||||||||||||    
T  38339910 aaatagttagaggaccaaaaaggtaattaagcca 38339943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 50978891 - 50978960
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||| | ||||||||| ||||| ||||||||| ||||||||| ||||| ||| | |||||||||||||    
T  50978891 ggttattacgttgcacttatctcctataatgaacaagaaattgagtgaatacattgtctaaagcatctaa 50978960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 53994966 - 53994933
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||||||||||||||||    
T  53994966 aaatagttagaggaccaaaaaggtaattaagcca 53994933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14985749 - 14985781
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  14985749 aaatagttagaggaccaaaaaggtaattaagcc 14985781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 15477677 - 15477645
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  15477677 aaatagttagaggaccaaaaaggtaattaagcc 15477645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 7355509 - 7355462
Alignment:
Q  115 cccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||| ||||||||||||||||| ||||||||||| | |||||||||||    
T  7355509 cccacaatgaacgagaaattgagtgaatgcatggtccaaagcatctaa 7355462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 30683558 - 30683527
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  30683558 aaatagttagaggaccaaaaaggtaattaagc 30683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 53751320 - 53751355
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    |||||||||||||||||||||||||||| |||||||    
T  53751320 aaatagttagaggaccaaaaaggtaatttagccaat 53751355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 8592387 - 8592421
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||||||||||||||| |||||||||||||    
T  8592387 aaatagttagaggaccaaaaatgtaattaagccaa 8592421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 38339524 - 38339490
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  38339524 aaatagttagaggaccaaaaaggtaattcagccaa 38339490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 39448906 - 39448940
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  39448906 aaatagttagaggaccaaaaaggtaatttagccaa 39448940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 50769239 - 50769269
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  50769239 aaatagttagaggaccaaaaaggtaattaag 50769269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 52557119 - 52557089
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  52557119 aaatagttagaggaccaaaaaggtaattaag 52557089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 42855371 - 42855330
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttta 58  Q
    ||||||||||||||||||||||||||||| ||| || |||||    
T  42855371 aaatagttagaggaccaaaaaggtaattacgcctatgtttta 42855330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 43734318 - 43734289
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  43734318 aaatagttagaggaccaaaaaggtaattaa 43734289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 4513334 - 4513366
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  4513334 aaatagttagaggaccaaaaaggtaatttagcc 4513366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 14985363 - 14985331
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  14985363 aaatagttagaggaccaaaaaggtaatttagcc 14985331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 16037826 - 16037794
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  16037826 aaatagttagaggaccaaaaatgtaattaagcc 16037794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 16038212 - 16038244
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  16038212 aaatagttagaggaccaaaaaggtaatttagcc 16038244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 19088759 - 19088791
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  19088759 aaatagttagaggaccaaaaaggtaatttagcc 19088791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 25181844 - 25181812
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  25181844 aaatagttagaggaccaaaaatgtaattaagcc 25181812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 25269418 - 25269450
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  25269418 aaatagttagaggaccaaaaaagtaattaagcc 25269450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 46849701 - 46849669
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  46849701 aaatagttagaggacgaaaaaggtaattaagcc 46849669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 47603779 - 47603811
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  47603779 aaatagttagaggaccaaaaaggtaatttagcc 47603811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 53995353 - 53995385
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  53995353 aaatagttagaggaccaaaaaggtaatttagcc 53995385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 55022316 - 55022284
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  55022316 aaatagttagaggaccaaaaaggtaatttagcc 55022284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 17468371 - 17468444
Alignment:
Q  89 tgtaggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    ||||| |||||||||| ||||| || |||||||||||  ||||||||| ||||||| |||| ||||||||||||    
T  17468371 tgtagtttatcatgttacacttatcccccataatgaataagaaattgagtgaatgcgtggcataaagcatctaa 17468444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 19128471 - 19128505
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  19128471 aaatagttagaggaccaaaaaggtaattaagccaa 19128505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 38958756 - 38958722
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  38958756 aaatagttagaggaccaaaaaggtaattaagccaa 38958722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 38959141 - 38959173
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  38959141 aaatagttagaggaccaaaaaggtaattaagcc 38959173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 19184629 - 19184598
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  19184629 aaatagttagaggaccaaaaaggtaattaagc 19184598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 32288110 - 32288079
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  32288110 aaatagttagaggaccaaaaaggtaattaagc 32288079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 1140183 - 1140217
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||||||||||||||||| |||||||||||    
T  1140183 aaatagttagaggaccaaaaaggcaattaagccaa 1140217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 16510554 - 16510608
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatg 147  Q
    |||||||| ||||||||| | |||||||||||| ||||||||||  |||||||||    
T  16510554 ggttatcacgttgcacttatttcccataatgaatgagaaattgagcgaatgcatg 16510608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27185906 - 27185872
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||||||||||||||| |||||||||||||    
T  27185906 aaatagttagaggaccaaaaaagtaattaagccaa 27185872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 25183071 - 25183100
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  25183071 aaatagttagaggaccaaaaaggtaattaa 25183100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 34264383 - 34264351
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||| ||||||||||||||||||    
T  34264383 aaatagttagaggatcaaaaaggtaattaagcc 34264351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 36440232 - 36440200
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||| ||||||||||||||||||    
T  36440232 aaatagttagaggatcaaaaaggtaattaagcc 36440200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 17244696 - 17244661
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  17244696 aaatagttagaggaccaaaaaggtaattaagccaat 17244661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 31238164 - 31238198
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  31238164 aaatagttagaggaccaaaaaggtaattaagccaa 31238198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 31247534 - 31247568
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  31247534 aaatagttagaggaccaaaaaggtaattaagccaa 31247568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 35167522 - 35167488
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  35167522 aaatagttagaggaccaaaaaggtaattaagccaa 35167488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 2517420 - 2517453
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||||||||||||||||    
T  2517420 aaatagttagaggaccaaaaaggtaattaagcca 2517453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6137411 - 6137379
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  6137411 aaatagttagaggaccaaaaaggtaattaagcc 6137379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 9046504 - 9046536
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  9046504 aaatagttagaggaccaaaaaggtaattaagcc 9046536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 6532224 - 6532189
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    ||||||||||||||| ||||||||||||||||||||    
T  6532224 aaatagttagaggacaaaaaaggtaattaagccaat 6532189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 32753209 - 32753166
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttatc 60  Q
    ||||||||||||||||||||| |||||| ||||||| |||||||    
T  32753209 aaatagttagaggaccaaaaatgtaatttagccaatattttatc 32753166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 6137795 - 6137825
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  6137795 aaatagttagaggaccaaaaaggtaattaag 6137825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 14276431 - 14276389
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    |||||| ||||||||||||||||||||||| || |||||||||    
T  14276431 aaataggtagaggaccaaaaaggtaattaaacctattttttat 14276389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 32753591 - 32753621
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  32753591 aaatagttagaggaccaaaaaggtaattaag 32753621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 34518110 - 34518144
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  34518110 aaatagttagaggaccaaaaaggtaatttagccaa 34518144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 5937845 - 5937816
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  5937845 aaatagttagaggaccaaaaaggtaattaa 5937816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 6633875 - 6633806
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||| |||||||||  | ||||||||| || || |||||||||||||||| |||| || |||||||    
T  6633875 ggttatcacgttgcacttagcccccataatggacaagtaattgaatgaatgcattgccttaaacatctaa 6633806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 24744738 - 24744771
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    |||||||||||||||||||||| |||||||||||    
T  24744738 aaatagttagaggaccaaaaagataattaagcca 24744771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 978447 - 978415
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  978447 aaatagttagaggaccaaaaatgtaattaagcc 978415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 6235953 - 6235921
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  6235953 aaatagttagaggaccaaaaaggtaatttagcc 6235921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 7271047 - 7271079
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||||| |||||||||    
T  7271047 aaatagttagaggaccaaaaaggcaattaagcc 7271079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 15932762 - 15932730
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  15932762 aaatagttagaggaccaaaaaggtaatttagcc 15932730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 18053371 - 18053403
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||| ||||||    
T  18053371 aaatagttagaggaccaaaaaggtaactaagcc 18053403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 21856587 - 21856555
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  21856587 aaatagttagaggaccaaaaatgtaattaagcc 21856555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 4062 - 4024
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttt 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  4062 aaatagttagaggaccaaaaaggtaattaagcccatttt 4024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 4085 - 4120
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaat 52  Q
    |||||||||||||||||||||||||||| |||||||    
T  4085 aaatagttagaggaccaaaaaggtaatttagccaat 4120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 34470962 - 34470996
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  34470962 aaatagttagaggaccaaaaaggtaattaagccaa 34470996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 45077253 - 45077219
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||||||||||    
T  45077253 aaatagttagaggaccaaaaaggtaattaagccaa 45077219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 1646533 - 1646501
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  1646533 aaatagttagaggaccaaaaaggtaattaagcc 1646501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 24666096 - 24666128
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  24666096 aaatagttagaggaccaaaaaggtaattaagcc 24666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 37569346 - 37569306
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttt 57  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  37569346 aaatagttagaggaccaaaaaggtaatcaagcctatttttt 37569306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 45077618 - 45077653
Alignment:
Q  14 atcaaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||||||||||||| ||||    
T  45077618 atcaaatagttagaggaccaaaaaggtaatttagcc 45077653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 1646924 - 1646966
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaattttttat 59  Q
    ||||||||||||||| ||||||||||||||||| || ||||||    
T  1646924 aaatagttagaggacgaaaaaggtaattaagcctatattttat 1646966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 5434932 - 5434902
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  5434932 aaatagttagaggaccaaaaaggtaattaag 5434902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 12643934 - 12643968
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||| ||||||||||||    
T  12643934 aaatagttagaggaccaaaaagataattaagccaa 12643968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 15048817 - 15048847
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaag 47  Q
    |||||||||||||||||||||||||||||||    
T  15048817 aaatagttagaggaccaaaaaggtaattaag 15048847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 15871653 - 15871619
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||| |||||||||||||||||||||||||    
T  15871653 aaatagttaaaggaccaaaaaggtaattaagccaa 15871619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 45276629 - 45276595
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||| ||||||||||||    
T  45276629 aaatagttagaggaccaaaaagataattaagccaa 45276595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 1651989 - 1652018
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  1651989 aaatagttagaggaccaaaaaggtaattaa 1652018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 1740365 - 1740394
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  1740365 aaatagttagaggaccaaaaaggtaattaa 1740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 27473104 - 27473071
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    |||||||||||||||||||||| |||||||||||    
T  27473104 aaatagttagaggaccaaaaagataattaagcca 27473071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 30123055 - 30122987
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaa 162  Q
    |||||||| ||||||||| || ||||||||||| |||||||| | | |||| |||||||||| |||||||    
T  30123055 ggttatcacgttgcacttatc-cccataatgaatgagaaattaagtaaatgtatggcctaaaacatctaa 30122987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 40660304 - 40660333
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  40660304 aaatagttagaggaccaaaaaggtaattaa 40660333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 1739980 - 1739952
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaatta 45  Q
    |||||||||||||||||||||||||||||    
T  1739980 aaatagttagaggaccaaaaaggtaatta 1739952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 1870353 - 1870385
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  1870353 aaatagttagaggaccaaaaatgtaattaagcc 1870385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 11920108 - 11920076
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  11920108 aaatagttagaggaccaaaaatgtaattaagcc 11920076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 15048431 - 15048399
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  15048431 aaatagttagaggaccaaaaaggtaatttagcc 15048399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 15872039 - 15872079
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttt 57  Q
    ||||||||||||||||||||| |||||| |||||| |||||    
T  15872039 aaatagttagaggaccaaaaatgtaatttagccaaattttt 15872079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 22763351 - 22763383
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  22763351 aaatagttagaggaccaaaaaggtaatttagcc 22763383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 24652855 - 24652823
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  24652855 aaatagttagaggaccaaaaatgtaattaagcc 24652823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33296102 - 33296134
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  33296102 aaatagttagaggaccaaaaaggtaatttagcc 33296134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 72794 - 72753
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttta 58  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  72794 aaatagttagaggaccaaaaaggtaattaagcctttttttta 72753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 73179 - 73211
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  73179 aaatagttagaggaccaaaaatgtaattaagcc 73211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 21544 - 21512
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  21544 aaatagttagaggaccaaaaaggtaattaagcc 21512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 22571 - 22603
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  22571 aaatagttagaggaccaaaaaggtaattaagcc 22603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 24371999 - 24371967
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  24371999 aaatagttagaggaccaaaaaggtaattaagcc 24371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 33470341 - 33470373
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||||||||    
T  33470341 aaatagttagaggaccaaaaaggtaattaagcc 33470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 33856595 - 33856535
Alignment:
Q  93 ggttatcatgttgcacttgtctcccataatgaacgagaaattgaatgaatgcatggcctaa 153  Q
    |||||||| |||||||||  |||||||||||||| | ||||||||||| ||||| ||||||    
T  33856595 ggttatcacgttgcacttaactcccataatgaacaataaattgaatgattgcattgcctaa 33856535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 17558955 - 17558880
Alignment:
Q  115 cccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaaagaatgtctattcatgattttatggttt 190  Q
    ||||||| ||| |||||||||| | ||||||||||||||| |||||||  | || ||||| |||| ||||||||||    
T  17558955 cccataacgaatgagaaattgagttaatgcatggcctaaaacatctaatcagtgactatttatgaatttatggttt 17558880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 26181732 - 26181701
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagc 48  Q
    ||||||||||||||||||||||||||||||||    
T  26181732 aaatagttagaggaccaaaaaggtaattaagc 26181701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 15744865 - 15744899
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    ||||||||||||||||||||| |||||||||||||    
T  15744865 aaatagttagaggaccaaaaatgtaattaagccaa 15744899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 29472274 - 29472240
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaa 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  29472274 aaatagttagaggaccaaaaaggtaattgagccaa 29472240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 2147917 - 2147888
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  2147917 aaatagttagaggaccaaaaaggtaattaa 2147888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 8173917 - 8173888
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaa 46  Q
    ||||||||||||||||||||||||||||||    
T  8173917 aaatagttagaggaccaaaaaggtaattaa 8173888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 8444854 - 8444813
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttttta 58  Q
    ||||||||||| |||||||||||||||||| || ||||||||    
T  8444854 aaatagttagaagaccaaaaaggtaattaaacctatttttta 8444813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 7496012 - 7495980
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  7496012 aaatagttagaggaccaaaaatgtaattaagcc 7495980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 10991883 - 10991851
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  10991883 aaatagttagaggaccaaaaaggtaatttagcc 10991851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 15405788 - 15405756
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||| |||||||||||    
T  15405788 aaatagttagaggaccaaaaatgtaattaagcc 15405756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 24138100 - 24138068
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  24138100 aaatagttagaggaccaaaaaggtaatttagcc 24138068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 29472660 - 29472692
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||||||||| |||||||    
T  29472660 aaatagttagaggaccaaaaaggtatttaagcc 29472692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 34735761 - 34735797
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatt 53  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  34735761 aaatagttagaggaccaaaaatgtaatttagccaatt 34735797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24580 - 24618
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagccaatttt 55  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  24580 aaatagttagagtaccaaaaatgtaattaagccaatttt 24618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 24194 - 24162
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  24194 aaatagttagaggaccaaaaaggtaatttagcc 24162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 113784 - 113817
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcca 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  113784 aaatagttagaggaccaaaaatgtaattaagcca 113817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 8461 - 8429
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  8461 aaatagttagaggaccaaaaaggtaatttagcc 8429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 14167 - 14135
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    ||||||||||||||||||| |||||||||||||    
T  14167 aaatagttagaggaccaaacaggtaattaagcc 14135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14553 - 14585
Alignment:
Q  17 aaatagttagaggaccaaaaaggtaattaagcc 49  Q
    |||||||||||||||||||||||||||| ||||    
T  14553 aaatagttagaggaccaaaaaggtaatttagcc 14585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University