View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_121 (Length: 221)

Name: NF1705_high_121
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_121
NF1705_high_121
[»] chr7 (2 HSPs)
chr7 (1-96)||(31301582-31301677)
chr7 (126-202)||(31301476-31301552)
[»] chr5 (1 HSPs)
chr5 (133-188)||(5745057-5745113)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31301677 - 31301582
Alignment:
Q  1 acgagtatatgcaaaatgcacaaagaacttgcggcaaggaaggaacaagatacaacaatgatgccgtctacatacgttacacctccaccaccagag 96  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31301677 acgagtatatgcaaaatgcacaaagaactcgcggcaaggaaggaacaagatacaacaatgatgccgtctacatacgttacacctccaccaccagag 31301582  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 31301552 - 31301476
Alignment:
Q  126 ggcattggacattgaggctgagatatacctttataacaagcataccactgcctcaagttcgaaacaccccaagaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31301552 ggcattggacattgaggctgagatatacctttataacaagcatactactgcctcaagttcgaaacaccccaagaaaa 31301476  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 5745057 - 5745113
Alignment:
Q  133 gacattgaggctgagatatacctttataac-aagcataccactgcctcaagttcgaa 188  Q
    ||||||||||||||||||||| |||||||| |||||||||||  |||||||| ||||    
T  5745057 gacattgaggctgagatatacatttataacgaagcataccaccacctcaagtccgaa 5745113  T

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