View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_13 (Length: 495)

Name: NF1705_high_13
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_13
NF1705_high_13
[»] chr1 (7 HSPs)
chr1 (15-480)||(3680282-3680749)
chr1 (161-291)||(9154412-9154548)
chr1 (63-200)||(52361461-52361600)
chr1 (116-288)||(45199872-45200048)
chr1 (124-291)||(45931499-45931670)
chr1 (124-291)||(46239925-46240096)
chr1 (161-262)||(36669913-36670016)
[»] chr4 (8 HSPs)
chr4 (52-291)||(24703068-24703314)
chr4 (60-220)||(2506362-2506525)
chr4 (140-291)||(54452058-54452214)
chr4 (124-291)||(5609568-5609739)
chr4 (124-291)||(30819796-30819967)
chr4 (124-227)||(418502-418605)
chr4 (161-227)||(14345654-14345720)
chr4 (116-152)||(36559462-36559498)
[»] chr8 (6 HSPs)
chr8 (62-283)||(39317358-39317581)
chr8 (124-308)||(35976856-35977045)
chr8 (140-227)||(30884327-30884414)
chr8 (245-291)||(12806310-12806356)
chr8 (123-227)||(24041052-24041156)
chr8 (161-227)||(8549448-8549514)
[»] chr3 (9 HSPs)
chr3 (161-291)||(43366112-43366245)
chr3 (57-283)||(8735798-8736026)
chr3 (57-283)||(9088039-9088267)
chr3 (57-227)||(52746759-52746929)
chr3 (57-220)||(27095751-27095916)
chr3 (161-291)||(24912484-24912617)
chr3 (116-227)||(32311692-32311803)
chr3 (140-291)||(15510692-15510850)
chr3 (245-291)||(10054726-10054772)
[»] chr2 (6 HSPs)
chr2 (131-287)||(31465264-31465428)
chr2 (138-235)||(30518156-30518253)
chr2 (188-287)||(17894668-17894770)
chr2 (51-143)||(43317845-43317940)
chr2 (124-227)||(5377417-5377520)
chr2 (121-191)||(8861988-8862058)
[»] chr6 (6 HSPs)
chr6 (161-291)||(27152818-27152949)
chr6 (161-291)||(27111021-27111155)
chr6 (171-241)||(9184216-9184286)
chr6 (161-223)||(10960288-10960350)
chr6 (161-227)||(17004106-17004172)
chr6 (138-212)||(29208480-29208554)
[»] chr7 (5 HSPs)
chr7 (49-215)||(49113595-49113765)
chr7 (124-291)||(8226974-8227145)
chr7 (146-284)||(21501188-21501330)
chr7 (164-227)||(30954044-30954107)
chr7 (116-152)||(19756346-19756382)
[»] chr5 (7 HSPs)
chr5 (123-194)||(9043406-9043477)
chr5 (140-291)||(14463538-14463693)
chr5 (124-291)||(10365228-10365399)
chr5 (124-291)||(19965026-19965197)
chr5 (124-191)||(9270473-9270540)
chr5 (124-182)||(8931819-8931877)
chr5 (124-291)||(38477514-38477685)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 3680282 - 3680749
Alignment:
Q  15 tatcatgggctagaaaaagaaacaatgttgggtctggttatgtaaaatttatttggattgaatttactaaaaaa-ccagtttaataaaaactacacctct 113  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  3680282 tatcatgggctagaaaaagaaacaatgttgggcttggttatataaaatttatttggattgaatttactaaaaaaaccactttaataaatactacacctct 3680381  T
Q  114 tcaaaatataatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatgga 213  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3680382 tcaaaatataatacactttgatttatagatcggatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatgga 3680481  T
Q  214 ttggatgattttttcaacaaaacaatattgaattttaatggactaatgaattattttgattcatccattaggatccaatccatccattttgccactctat 313  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3680482 ttggatggttttttcaacaaaacaatattgaattttaatggactaatgaattattttgattcatccattaggatccaatccatccattttgccactctat 3680581  T
Q  314 ctcaaatgctaacaaattgttttgatgattgtggatgaaatagcttaaaactggaggtgattcacgggtgtggaagtttcgagcaccggttatgaactcc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3680582 ctcaaatgctaacaaattgttttgatgattgtggatgaaatagcttaaaactggaggtgattcacgggtgtggaagtttcgagcaccggttatgaactcc 3680681  T
Q  414 ccatgtgtg-ttttttattggagtaaacttgtacaacttaacactatgaatattctcaattgagctaa 480  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3680682 ccatgtgtgtttttttattggagtaaacttgtacaacttaacactattaatattctcaattgagctaa 3680749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 9154412 - 9154548
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgattttttcaaca------aaacaatattgaattttaatgg 254  Q
    ||||||||| |||||||||||| ||| |||| |||||| |||||||| ||||||||||||||||||| || |      ||| |||| || ||||||||||    
T  9154412 cattaaaatctaataatggatggattggatggacataaaacttaatgcatggattggatgattttttaaaaaaaaaataaaaaatagtggattttaatgg 9154511  T
Q  255 actaatgaattattttgattcatccattaggatccaa 291  Q
    ||||||||||| ||||||  |||||||||||||||||    
T  9154512 actaatgaatttttttgacccatccattaggatccaa 9154548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 52361461 - 52361600
Alignment:
Q  63 ttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaaa--atataatacactttgatttatggatcagatggatatcccaat 160  Q
    ||||||||| ||||||| |||| |||||| ||||||||| | ||||| |||||| |  | ||||||||  |||||||||||||| |||||||   |||      
T  52361461 ttatttggactgaatttgctaagaaaccattttaataaacaatacacatcttcagacaaaataatacatcttgatttatggatcggatggattatccatc 52361560  T
Q  161 cattaaaatttaataatggatgaattagatgaacataata 200  Q
    || |||||| |||||||||||| |||||||| ||||||||    
T  52361561 caataaaatctaataatggatggattagatggacataata 52361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 288
Target Start/End: Original strand, 45199872 - 45200048
Alignment:
Q  116 aaaatataatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggatt 215  Q
    |||| |||||||||||||||||||||||| |||||||   |||  ||||||||| ||||||| |||| || ||||  || | || || | ||||||||||    
T  45199872 aaaaaataatacactttgatttatggatcggatggattatccatccattaaaatctaataatagatggatcagattgactttattctaattggatggatt 45199971  T
Q  216 ggatgattttttcaac---aaaacaatattgaattttaatggactaatgaat-tattttgattcatccattaggatc 288  Q
    ||||||||||||  |    |||| |||| || ||| |||||||||||||||  | ||||||| ||||||||||||||    
T  45199972 ggatgattttttttaagaaaaaaaaataatggattgtaatggactaatgaaccttttttgatccatccattaggatc 45200048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Original strand, 45931499 - 45931670
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||||||| |||  || | || || | |||||||| |||||| ||    
T  45931499 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatgaattggatagactttattctaattggatggactggatggtt 45931598  T
Q  224 tttt---caacaaaacaatattgaattttaatggactaat-gaattattttgattcatccattaggatccaa 291  Q
    ||||     | |||| |||| || ||| |||||||||||| ||  | ||||||| |||||||||||||||||    
T  45931599 ttttttaagaaaaaagaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaa 45931670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 46240096 - 46239925
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| | |||||||    
T  46240096 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 46239997  T
Q  224 ttttc---aacaaaacaatattgaattttaatggactaatgaat-tattttgattcatccattaggatccaa 291  Q
    ||||    |  |||| |||| || ||| ||||||||||||| |  | ||||||| |||||||||||||||||    
T  46239996 tttttttaagaaaaaaaataatggattgtaatggactaatggaccttttttgatccatccattaggatccaa 46239925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 36669913 - 36670016
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgattttttcaacaaaaca---atattgaattttaatggact 257  Q
    ||||||||| |||||| | ||| ||| |||| |||| ||| ||||||||||||||  ||| |||||||||||||| |   ||| |||||| |||||||||    
T  36669913 cattaaaatctaataa-gaatggattggatggacattatagttaatggatggattaaatggttttttcaacaaaagaaatataatgaattataatggact 36670011  T
Q  258 aatga 262  Q
    |||||    
T  36670012 aatga 36670016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 52 - 291
Target Start/End: Original strand, 24703068 - 24703314
Alignment:
Q  52 ttatgtaaaatttatttggattgaatttactaaa-aaaccagtttaataaaaactacacctcttcaaa--atataatacactttgatttatggatcagat 148  Q
    |||| ||||||||||||| ||||||||||||||| ||| | | |||||||| | |||||| |||||||  | |||||||||||||||||||| ||| |||    
T  24703068 ttatataaaatttatttgcattgaatttactaaacaaagctgattaataaataatacaccccttcaaacaaaataatacactttgatttatgaatcggat 24703167  T
Q  149 ggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggat-gattttttcaac--aaaacaatattgaa 245  Q
    ||||   |||  || ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| | |||||| |||  |||| |||| || |    
T  24703168 ggattatccatccaataaaatttaataatggatggattggatggacataatacttaatggatggattggatggttttttttaacaaaaaaaaatagtgga 24703267  T
Q  246 ttttaatggactaat-gaattattttgattcatccattaggatccaa 291  Q
    || |||||||||||| ||  | ||||||| ||||||||| |||||||    
T  24703268 ttgtaatggactaatggaccttttttgatccatccattaagatccaa 24703314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 2506525 - 2506362
Alignment:
Q  60 aatttatttggattgaatttacta-aaaaaccagtttaataaaaactacacctcttcaaa--atataatacactttgatttatggatcagatggatatcc 156  Q
    |||||||||||||||||||||||| ||||| || ||||||||| | |||||||||| |||  | |||||||||||||||||||||||| |||| ||   |    
T  2506525 aatttatttggattgaatttactagaaaaaacactttaataaataatacacctcttaaaataaaataatacactttgatttatggatctgatgaattatc 2506426  T
Q  157 caatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg 220  Q
    ||  || |||||  |||||||| ||| |||  ||||||||||||||||||||||| ||| ||||    
T  2506425 catccaataaaacctaataatgaatggattgtatgaacataatacttaatggatgaattagatg 2506362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 54452214 - 54452058
Alignment:
Q  140 ggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg-----attttttcaacaaa 234  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||| ||| |||| |||||| || ||||||||||||||||||      ||||||||| |||    
T  54452214 ggatcggatggataatccatccatttaaatttaataatggatggattggatggacataaaacctaatggatggattggatggtttttttttttcaaaaaa 54452115  T
Q  235 acaatattgaattttaatggactaatgaattattttgattcatccattaggatccaa 291  Q
    | | |  || ||||||||||| ||||| ||| ||||| | |||||||||||||||||    
T  54452114 aaattggtggattttaatggattaatggatttttttggtccatccattaggatccaa 54452058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 5609739 - 5609568
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | ||  | | |||||||| |||||||||    
T  5609739 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattttaattggatggactggatgatt 5609640  T
Q  224 tttt---caacaaaacaatattgaattttaatggactaat-gaattattttgattcatccattaggatccaa 291  Q
    ||||     | |||| |||| || ||| |||||||||||| ||  | ||||||| |||||||||||||||||    
T  5609639 ttttttaagaaaaaaaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaa 5609568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Original strand, 30819796 - 30819967
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| | |||||||    
T  30819796 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 30819895  T
Q  224 ttttc---aacaaaacaatattgaattttaatggactaatgaat-tattttgattcatccattaggatccaa 291  Q
    ||||    |  |||| |||| || ||| ||||||||||||| |  | ||||||| |||||||||||||||||    
T  30819896 tttttttaagaaaaaaaataatggattgtaatggactaatggaccttttttgatccatccattaggatccaa 30819967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 418605 - 418502
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| |||||| ||    
T  418605 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 418506  T
Q  224 tttt 227  Q
    ||||    
T  418505 tttt 418502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 14345720 - 14345654
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
    |||||||||||||||||||||| ||| |||| |||||| || |||| ||| ||||||||| ||||||    
T  14345720 cattaaaatttaataatggatggattggatggacataaaacctaatagatagattggatggtttttt 14345654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 36559498 - 36559462
Alignment:
Q  116 aaaatataatacactttgatttatggatcagatggat 152  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36559498 aaaaaataatacactttgatttatggatcagatggat 36559462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 39317581 - 39317358
Alignment:
Q  62 tttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaaa-atataatacactttgatttatggatcagatggatatcccaat 160  Q
    |||||||||| |||||| | ||| ||| |  ||||||||  | |||||||||| ||| | ||||||||||||||||||||||||| ||| ||   |||      
T  39317581 tttatttggactgaattcattaacaaatccctttaataattaatacacctcttaaaataaataatacactttgatttatggatcaaatgaattatccatc 39317482  T
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt-caacaaaacaatattgaattttaatggactaa 259  Q
    ||||||||| |||||||||||| |||  |||||||||||| ||||||||| |||| |||| |||||| |||||||| || | || |||||||||||||||    
T  39317481 cattaaaatctaataatggatggattgaatgaacataatatttaatggatagatttgatggtttttttcaacaaaaaaaaagtggattttaatggactaa 39317382  T
Q  260 tgaattattttgattcatccatta 283  Q
    |||||| ||||||| |||||||||    
T  39317381 tgaatttttttgatccatccatta 39317358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 308
Target Start/End: Original strand, 35976856 - 35977045
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| ||| |||||||| ||| |||| || | || || ||||||||||  |||| |||    
T  35976856 atacactttgatttatggatcggatggattatccatccattaaaatctaacaatggatggattggatggactttattctaaatggatggaccggataatt 35976955  T
Q  224 t---tttcaacaaaacaatattgaattttaatggactaatgaa-ttattttgattcatccattaggatcc-aatccatccattttgccac 308  Q
    |   ||| || |||| |||| || ||| ||||| |||||||||  | ||||||| |||||| |||||||| |||||||||||||||||||    
T  35976956 tttatttaaaaaaaataatagtggattgtaatgaactaatgaaccttttttgatccatccagtaggatccaaatccatccattttgccac 35977045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 30884414 - 30884327
Alignment:
Q  140 ggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||| ||| |||| |||||| || |||||||||||||||||| ||||||    
T  30884414 ggatcggatggataatccatccatttaaatttaataatggatggattggatggacataaaacctaatggatggattggatggtttttt 30884327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 12806356 - 12806310
Alignment:
Q  245 attttaatggactaatgaattattttgattcatccattaggatccaa 291  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  12806356 attttaatggactaatgaatttttttgatccatccattaggatccaa 12806310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 24041156 - 24041052
Alignment:
Q  123 aatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgat 222  Q
    |||||||||||||||||||||| |||||||   |||  ||||||||| ||||||||||| |||| |||| || | || || | |||||||||| |||| |    
T  24041156 aatacactttgatttatggatcggatggattatccatccattaaaatctaataatggataaattggatggacgttattctaattggatggattagatggt 24041057  T
Q  223 ttttt 227  Q
    |||||    
T  24041056 ttttt 24041052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 8549514 - 8549448
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
    |||| ||||||||||||||||| ||| |||| |||||| || |||||||| ||||||||| ||||||    
T  8549514 catttaaatttaataatggatggattggatggacataaaacctaatggatagattggatggtttttt 8549448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 43366112 - 43366245
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg---attttttcaacaaaacaatattgaattttaatggact 257  Q
    |||||||||||||||||||||||||| |||| |||||| |  ||||||||||||||||||    ||||||||| |||| |||  || |||||||||||||    
T  43366112 cattaaaatttaataatggatgaattggatggacataaaatctaatggatggattggatggtttttttttcaaaaaaaaaatggtggattttaatggact 43366211  T
Q  258 aatgaattattttgattcatccattaggatccaa 291  Q
    |||| ||| ||||||| ||||||||| |||||||    
T  43366212 aatggatttttttgatccatccattatgatccaa 43366245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 283
Target Start/End: Original strand, 8735798 - 8736026
Alignment:
Q  57 taaaatttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaaaatataatacactttgatttatggatcagatggatatcc 156  Q
    |||||||||||| ||||||||| || || ||| || || ||| || | ||||||| |  |||| |||||||||||||||||||||||| |||||||   |    
T  8735798 taaaatttatttagattgaattcacaaataaaacacttcaattaataatacacctatcaaaaaaataatacactttgatttatggatcggatggattatc 8735897  T
Q  157 caatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgattttttcaa-caaaacaatattgaattttaatgga 255  Q
    ||  |||||||||  ||||||||||| ||| |||| || | || || |||||||||||| |||| |||||| ||  |||| |||| || ||| |||||||    
T  8735898 catccattaaaatcaaataatggatggattggatggactttattctaaatggatggatttgatggtttttttaaggaaaaaaatagtggattgtaatgga 8735997  T
Q  256 ctaatgaa-ttattttgattcatccatta 283  Q
    ||||||||  | |||| ||||||||||||    
T  8735998 ctaatgaacctttttttattcatccatta 8736026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 283
Target Start/End: Original strand, 9088039 - 9088267
Alignment:
Q  57 taaaatttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaaaatataatacactttgatttatggatcagatggatatcc 156  Q
    |||||||||||| ||||||||| || || ||| || || ||| || | ||||||| |  |||| |||||||||||||||||||||||| |||||||   |    
T  9088039 taaaatttatttagattgaattcacaaataaaacacttcaattaataatacacctatcaaaaaaataatacactttgatttatggatcggatggattatc 9088138  T
Q  157 caatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgattttttcaa-caaaacaatattgaattttaatgga 255  Q
    ||  |||||||||  ||||||||||| ||| |||| || | || || |||||||||||| |||| |||||| ||  |||| |||| || ||| |||||||    
T  9088139 catccattaaaatcaaataatggatggattggatggactttattctaaatggatggatttgatggtttttttaaggaaaaaaatagtggattgtaatgga 9088238  T
Q  256 ctaatgaa-ttattttgattcatccatta 283  Q
    ||||||||  | |||| ||||||||||||    
T  9088239 ctaatgaacctttttttattcatccatta 9088267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 52746759 - 52746929
Alignment:
Q  57 taaaatttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaaaatataatacactttgatttatggatcagatggatatcc 156  Q
    |||||||| ||  ||||||||| |||||| || ||  |||||||  | |||||||||| |||| || |||||| |||||| ||||||| ||||||||  |    
T  52746759 taaaatttcttatgattgaattcactaaataaacacattaataactaatacacctcttaaaaaaatcatacacattgattgatggatcggatggataatc 52746858  T
Q  157 caatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
     |  ||||||||| |||||||| ||| ||| |||  |||||||  ||||||||||||||||||| ||||||    
T  52746859 tatccattaaaatctaataatgaatggattggattgacataatctttaatggatggattggatggtttttt 52746929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 27095916 - 27095751
Alignment:
Q  57 taaaatttatttggattgaatttactaaaaaaccagtttaataaaaactacacctcttcaa---aatataatacactttgatttatggatcagatggata 153  Q
    ||||||||||||||||| ||||||||  |||| || || |||||| |  ||||||||||||   || || |||||| ||||||||||||||  | |||||    
T  27095916 taaaatttatttggattaaatttactcgaaaaacacttcaataaataacacacctcttcaaaagaaaatcatacacattgatttatggatcgaaaggata 27095817  T
Q  154 tcccaatc-attaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg 220  Q
    |||  ||| |||||||| | ||||| |||| |||||||| |||||||| |||| ||||||||| ||||    
T  27095816 tcc--atctattaaaatatgataatagatggattagatggacataatatttaagggatggattagatg 27095751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 291
Target Start/End: Original strand, 24912484 - 24912617
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaat--ggatggattggatgatttttt--caacaaaacaatattgaattttaatggac 256  Q
    |||| ||||||||||||||||| ||| |||| |||||| || ||||  |||||||||||||||||||||  ||| |||| | |  || ||||||||||||    
T  24912484 catttaaatttaataatggatggattggatggacataaaacataatatggatggattggatgattttttttcaaaaaaa-attgatggattttaatggac 24912582  T
Q  257 taatgaattattttgattcatccattaggatccaa 291  Q
    ||||| ||| |||| ||  ||||||||||||||||    
T  24912583 taatggatttttttaatcgatccattaggatccaa 24912617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 32311803 - 32311692
Alignment:
Q  116 aaaatataatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggatt 215  Q
    |||| |||||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| |    
T  32311803 aaaaaataatacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggact 32311704  T
Q  216 ggatgatttttt 227  Q
    ||||| ||||||    
T  32311703 ggatggtttttt 32311692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 15510850 - 15510692
Alignment:
Q  140 ggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg-------attttttcaaca 232  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||| ||| |||  |||||| || ||||||||||||||||||        ||||||||| |    
T  15510850 ggatcggatggataatccatccatttaaatttaataatggatggattggatagacataaaacctaatggatggattggatggtttttttttttttcaaaa 15510751  T
Q  233 aaacaatattgaattttaatggactaatgaattattttgattcatccattaggatccaa 291  Q
    ||| | |  || ||||||||||||||||  ||| ||||| | |||||||||||||||||    
T  15510750 aaaaattggtggattttaatggactaattgatttttttggtccatccattaggatccaa 15510692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 10054726 - 10054772
Alignment:
Q  245 attttaatggactaatgaattattttgattcatccattaggatccaa 291  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  10054726 attttaatggactaatggatttttttgatccatccattaggatccaa 10054772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 287
Target Start/End: Complemental strand, 31465428 - 31465264
Alignment:
Q  131 ttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt--ttttc 228  Q
    |||||||||||||| ||||||||  |||  ||||||||| |||||||||||  ||| |||| |||||||  ||||||||||||||||||| ||  |||||    
T  31465428 ttgatttatggatcggatggataatccatccattaaaatctaataatggatagatttgatggacataatctttaatggatggattggatggtttcttttc 31465329  T
Q  229 aac-----aaaacaatattgaattttaatggactaat-gaattattttgattcatccattaggat 287  Q
    |||     |||| |||| || ||||||||||| |||| ||||| ||||||| |||||||||||||    
T  31465328 aacaaaaaaaaaaaatagtggattttaatggattaatggaatttttttgatccatccattaggat 31465264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 30518253 - 30518156
Alignment:
Q  138 atggatcagatggatatcccaatca-ttaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgat--tttttcaacaaa 234  Q
    ||||||| |||||||||||  |||| ||||||| |||||||||||||||| |||| |||||||||||| | |||| ||||||||||  ||||||||||||    
T  30518253 atggatcggatggatatcc--atcaattaaaatctaataatggatgaatt-gatggacataatacttattagatgtattggatgatcatttttcaacaaa 30518157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 17894668 - 17894770
Alignment:
Q  188 gatgaacataatacttaatggatggattggatgatttttt---caacaaaacaatattgaattttaatggactaatgaattattttgattcatccattag 284  Q
    |||| |||||| || |||||||||||||||||| ||||||   ||| |||| |||  |  ||||||||||||||||| ||| ||||||| ||||||||||    
T  17894668 gatggacataaaacctaatggatggattggatggtttttttttcaaaaaaaaaatggtagattttaatggactaatggatttttttgatccatccattag 17894767  T
Q  285 gat 287  Q
    |||    
T  17894768 gat 17894770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 43317940 - 43317845
Alignment:
Q  51 gttatgtaaaatttatttggattgaatttactaaaaaa-ccagtttaataaaaactacacctct--tcaaaatataatacactttgatttatggat 143  Q
    ||||| |||| ||||||||||||||||||||||||||| ||| ||||||||| | |||||||||  | | || |||| ||| ||||||||||||||    
T  43317940 gttatataaagtttatttggattgaatttactaaaaaagccactttaataaataatacacctctacttataaaataaaacattttgatttatggat 43317845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 5377417 - 5377520
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| | |||||    || |||||||||| |||||||||||| ||| |||| || | || || | |||||||| |||||| ||    
T  5377417 atacactttgatttatggatcggctggattattcattcattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 5377516  T
Q  224 tttt 227  Q
    ||||    
T  5377517 tttt 5377520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 8862058 - 8861988
Alignment:
Q  121 ataatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatg 191  Q
    |||||||||||||||||||||||| |||||||   |||  || |||||| |||||||||||| ||| ||||    
T  8862058 ataatacactttgatttatggatcggatggattatccatccaataaaatctaataatggatggattggatg 8861988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 27152949 - 27152818
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt--caacaaaacaatattgaattttaatggacta 258  Q
    |||||||||||||||||| ||| ||| |||| |||||| || |||||||||||||||||| ||||||  ||| |||| |||  || |||||||||| |||    
T  27152949 cattaaaatttaataatgaatggattggatggacataaaacctaatggatggattggatgtttttttttcaaaaaaa-aatggtggattttaatggtcta 27152851  T
Q  259 atgaattattttgattcatccattaggatccaa 291  Q
    ||  ||| |||||||  ||||||||||||||||    
T  27152850 atagatttttttgatctatccattaggatccaa 27152818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 27111155 - 27111021
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt----caacaaaacaatattgaattttaatggac 256  Q
    |||||||||||||||||| ||| ||| |||| |||||| || |||||||||||||||||| ||||||     || |||| |||  || |||||||||| |    
T  27111155 cattaaaatttaataatgaatggattggatggacataaaacctaatggatggattggatgttttttttttcaaaaaaaaaaatggtggattttaatggtc 27111056  T
Q  257 taatgaattattttgattcatccattaggatccaa 291  Q
    ||||  ||| |||||||  ||||||||||||||||    
T  27111055 taatagatttttttgatctatccattaggatccaa 27111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 9184286 - 9184216
Alignment:
Q  171 taataatggatgaattagatgaacataatacttaatggatggattggatgattttttcaacaaaacaatat 241  Q
    |||||||||||| | | ||||||||| |||||||||||||| ||| |||| |||||||||||||| |||||    
T  9184286 taataatggatggactggatgaacattatacttaatggatgaatttgatgtttttttcaacaaaaaaatat 9184216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 10960350 - 10960288
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||| ||||||||||| |||| |||||||||| |  |||||||||||| || ||||||    
T  10960350 cattaaaatctaataatggattaattggatgaacatattctttaatggatggactgaatgatt 10960288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 17004172 - 17004106
Alignment:
Q  161 cattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
    |||| |||||||||||| ||||  || |||| |||||| || |||||||||||||||||| ||||||    
T  17004172 catttaaatttaataatagatgggttggatggacataaaacctaatggatggattggatggtttttt 17004106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 29208554 - 29208480
Alignment:
Q  138 atggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatgg 212  Q
    ||||||| ||||||||  |||  ||| |||||||||||||||||| ||| |||| |||| ||| |||||||||||    
T  29208554 atggatcggatggataatccatccatcaaaatttaataatggatggattggatggacattatatttaatggatgg 29208480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 215
Target Start/End: Complemental strand, 49113765 - 49113595
Alignment:
Q  49 tggttatgtaaaatttatttggattgaatttactaa--aaaaccagtttaataaaaactacacctcttcaa--aatataatacactttgatttatggatc 144  Q
    |||||||  |||| ||||||||||||||||||||||  |||| || ||||||||| |  ||||||||||||  || ||| || ||||  |||||||||||    
T  49113765 tggttataaaaaagttatttggattgaatttactaaaaaaaaacattttaataaataacacacctcttcaaacaaaatattatacttcaatttatggatc 49113666  T
Q  145 agatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggatt 215  Q
    ||||||||   |||   | |||||  ||||||||||||  || |||  |||||||||||||||||||||||    
T  49113665 agatggattatccatctagtaaaaactaataatggatgggttggattgacataatacttaatggatggatt 49113595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Original strand, 8226974 - 8227145
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| | |||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| |||||| ||    
T  8226974 atacactttgatttatggatcgggtggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 8227073  T
Q  224 tttt---caacaaaacaatattgaattttaatggactaatgaa-ttattttgattcatccattaggatccaa 291  Q
    ||||     | |||| |||| || ||| |||||||||||||||  | ||||||| |||||||||||||||||    
T  8227074 ttttttaagaaaaaagaatagtggattgtaatggactaatgaaccttttttgatccatccattaggatccaa 8227145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 21501330 - 21501188
Alignment:
Q  146 gatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt--caacaaaaca-atatt 242  Q
    ||||||||||||| | |||||||| || |||| |||| ||| |||| |||| ||| | | ||||||||| ||||||||||||  |||||||| | ||| |    
T  21501330 gatggatatcccatttattaaaatctagtaattgatggattggatggacattatattcattggatggatgggatgatttttttacaacaaaaaatatagt 21501231  T
Q  243 gaattttaatggactaat-gaattattttgattcatccattag 284  Q
    | ||| ||||||| |||| ||||| |||| || ||||||||||    
T  21501230 ggattataatggattaatggaattttttttatccatccattag 21501188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 30954107 - 30954044
Alignment:
Q  164 taaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt 227  Q
    |||||| || ||||||||||||| |||| |||| ||| |||||||||| ||| |||||||||||    
T  30954107 taaaatctagtaatggatgaattggatggacattatatttaatggatgaatttgatgatttttt 30954044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 19756346 - 19756382
Alignment:
Q  116 aaaatataatacactttgatttatggatcagatggat 152  Q
    |||| |||||||||||| |||||||||||||||||||    
T  19756346 aaaaaataatacactttaatttatggatcagatggat 19756382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 9043477 - 9043406
Alignment:
Q  123 aatacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaac 194  Q
    ||||||||||||||||||||||| ||||||   ||| |||||||||| |||||||||||| ||| |||||||    
T  9043477 aatacactttgatttatggatcaaatggattatccattcattaaaatctaataatggatggattggatgaac 9043406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 14463538 - 14463693
Alignment:
Q  140 ggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatttttt----caacaaaa 235  Q
    ||||| ||||||||  |||  |||| ||||||||||||||||| ||| |||  |||||| || ||||||| |||||||||  ||||||    ||| |||     
T  14463538 ggatcggatggataatccatccatttaaatttaataatggatggattggattgacataaaacctaatggaaggattggattgttttttttttcaaaaaat 14463637  T
Q  236 caatattgaattttaatggactaatgaattattttgattcatccattaggatccaa 291  Q
     | |  || ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  14463638 aattggtggattttaatggactaatgaatttttttggtccatccattaggatccaa 14463693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 10365399 - 10365228
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| | |||||||    
T  10365399 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 10365300  T
Q  224 ttttc---aacaaaacaatattgaattttaatggactaatgaat-tattttgattcatccattaggatccaa 291  Q
    ||||    |  |||| |||| || ||| ||||||||||||| |  | ||||||| |||||||||||||||||    
T  10365299 tttttttaagaaaaaaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaa 10365228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 19965197 - 19965026
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatgatt 223  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| |||||| ||    
T  19965197 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 19965098  T
Q  224 tttt---caacaaaacaatattgaattttaatggactaatgaa-ttattttgattcatccattaggatccaa 291  Q
    ||||     | |||| |||| || ||| |||||||||||||||  | ||||||| |||||||||| ||||||    
T  19965097 ttttttaagaaaaaataatagtggattgtaatggactaatgaaccttttttgatccatccattagaatccaa 19965026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 9270540 - 9270473
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatg 191  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||||||||    
T  9270540 atacactttgatttatggatcggatggattagccatccattaaaatctaataatggatggattagatg 9270473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 8931877 - 8931819
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatg 182  Q
    |||||||||||||||||||||||||||||   |||  ||||||||| ||||||||||||    
T  8931877 atacactttgatttatggatcagatggattatccatccattaaaatctaataatggatg 8931819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 38477685 - 38477514
Alignment:
Q  124 atacactttgatttatggatcagatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattggatg--- 220  Q
    ||||||||||||||||||||| |||||||   |||  ||||||||| |||||||||||| ||| |||| || | || || | |||||||| | ||||       
T  38477685 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatggtt 38477586  T
Q  221 attttttcaacaaaacaatattgaattttaatggactaat-gaattattttgattcatccattaggatccaa 291  Q
     |||||| |  |||| |||| || ||| |||||||||||| ||  | ||||||| |||||||||||||||||    
T  38477585 tttttttaagaaaaaaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaa 38477514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University