View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_high_14 (Length: 483)
Name: NF1705_high_14
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 28130336 - 28130802
Alignment:
| Q |
18 |
cctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130336 |
cctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttc |
28130435 |
T |
|
| Q |
118 |
tacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaaggtatgg-----------------ccgagcaaaaattgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||| |
|
|
| T |
28130436 |
tacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaattgaa |
28130535 |
T |
|
| Q |
201 |
gctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcctctctcttttttcagagaagtctagacacaaaggtttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130536 |
gctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcctctctcttttttcagagaagtctagacacaaaggtttag |
28130635 |
T |
|
| Q |
301 |
aggtatgctcaattgtcgctaaacctattgcgaaggctaatacagtttcataatgatatcttaattcggcttcctctctttatttgatgatctaacttca |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130636 |
aggtatgctcaattctcgctaaacctattgcgaaggctaatacagtttcataatgatatcttaattcggcttcctctctttatttgatgatctaacttca |
28130735 |
T |
|
| Q |
401 |
ttatccnnnnnnnncattttacctttcatagctggcagtgtttgtttctgataaagttccagatatt |
467 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130736 |
ttatccttttttttcattttacctttcatagctggcagtgtttgtttctgataaagttccagatatt |
28130802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 185 - 467
Target Start/End: Complemental strand, 44821085 - 44820797
Alignment:
| Q |
185 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcctctctcttttttcagagaagtct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcctctctcttttttcagagaagtct |
44820986 |
T |
|
| Q |
285 |
agacacaaaggtttagaggtatgctcaattgtcgctaaacctattgcgaaggctaatac-agtttcataatgatatcttaattcggcttcctctctttat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| |||||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
44820985 |
agacacaaaggtttagaggtatgctcaatcgttactaaacctattgtgaaggccaatacgagtttcataataatatcttaattcggtttcctctctttat |
44820886 |
T |
|
| Q |
384 |
ttgatgatctaacttcattatcc-----nnnnnnnncattttacctttcatagctggcagtgtttgtttctgataaagttccagatatt |
467 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44820885 |
ttgatgatctaacttcattatcctttttttttttttcattttacctttcatagctggcagtgtttgtttctgataaagttccagatatt |
44820797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 44821279 - 44821119
Alignment:
| Q |
18 |
cctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttc |
117 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821279 |
cctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgcttc |
44821180 |
T |
|
| Q |
118 |
ta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaa |
176 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
44821179 |
tacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University