View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_19 (Length: 440)
Name: NF1705_high_19
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 67 - 426
Target Start/End: Complemental strand, 39385745 - 39385393
Alignment:
| Q |
67 |
agaggcttgaatttgttattatggttcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaa |
166 |
Q |
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| T |
39385745 |
agaggcttgaatttgttattatggttcatatacaaagtagtta----gagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaa |
39385650 |
T |
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| Q |
167 |
taaccatttttaaaatgtaaatctttatacacctaaacatctttgtaaggaaattatatttcttttgaaattaaagaagggaaaccagctttatgtaata |
266 |
Q |
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| T |
39385649 |
taaccatttttaaaatgtaaatctttatacacctaaacatctttgtaaggaaattatatttcttttgaaattaaag---ggaaaccagctttatgtaata |
39385553 |
T |
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| Q |
267 |
tttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctctagttttctacttgatgtgtttttgtaactg |
366 |
Q |
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| T |
39385552 |
tttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctctagttttctacttgatgtgtttttgtaactg |
39385453 |
T |
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| Q |
367 |
agattgaagtgataatttgatcaatttgtttactgttacaaaagggttctctgttttgtg |
426 |
Q |
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| T |
39385452 |
agtttgaagtgataatttgatcaatttgtttactgttacaaaagggttctctgttttgtg |
39385393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 426
Target Start/End: Original strand, 39218066 - 39218239
Alignment:
| Q |
255 |
ctttatgtaatatttgtgagaatcatctctgttgattaagactgctccatagatatgcagtaaatgtggtttaaaattctc---tagttttctacttgat |
351 |
Q |
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| T |
39218066 |
ctttatgtaatatttatcggaattatctctgttgactaagactgcttcatagatctgcagtctatgtggtttaaaattctcctatagtttt-gccttggt |
39218164 |
T |
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| Q |
352 |
gtgtttttgtaactgagattgaagtgataatttgatcaatttgtttactgttacaaaagggttctctgttttgtg |
426 |
Q |
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| T |
39218165 |
gtgtgtttgtaactgaaattgaaatgctaattttatcattttgtctactgtgacaaaatagttctctgttttgtg |
39218239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 39165039 - 39165159
Alignment:
| Q |
91 |
ttcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaataaccatttttaaaatgtaaatct |
190 |
Q |
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| T |
39165039 |
ttcatatacaaaccagttatttggagtacatgtcacattttactaaagttttgaatgtataaaaggtttaactatataaccattttttagatgt-gatct |
39165137 |
T |
|
| Q |
191 |
ttatacacctaaacatctttgt |
212 |
Q |
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| T |
39165138 |
ttatacacttgaacgtctttgt |
39165159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 39372909 - 39372972
Alignment:
| Q |
95 |
tatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctt |
158 |
Q |
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| T |
39372909 |
tatacaaactagttatttggagtacatgccacatgttactaaagtttagaatgtataaaagctt |
39372972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 39203771 - 39203686
Alignment:
| Q |
92 |
tcatatacaaactagttatttggagtacatgccacatgttactgaaattttgaatgtataaaagctttaactaaataaccattttt |
177 |
Q |
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| T |
39203771 |
tcatatacagactagttacttggagtacatgtcacattctactaaagttttgaatatataaaagatttaactatataaccattttt |
39203686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 39470662 - 39470634
Alignment:
| Q |
98 |
acaaactagttatttggagtacatgccac |
126 |
Q |
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| T |
39470662 |
acaaactagttatttggagtacatgccac |
39470634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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