View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_2 (Length: 745)
Name: NF1705_high_2
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 270 - 663
Target Start/End: Original strand, 41911111 - 41911504
Alignment:
| Q |
270 |
aaaccaaatagctaatagacccaaatatttaccatttatgtcacagtatggtggtgtttgataactagctagaaaggcatattattctccctnnnnnnnn |
369 |
Q |
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| T |
41911111 |
aaactaaatagctaatggacccaaatatttaccatttatgtcacagtatggtggtgtttgataactagctagaaaggcatattattctccctaaaaaaaa |
41911210 |
T |
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| Q |
370 |
tgcatattattcgtttctaatataaacatcagacgtaaactcattcacttctttcactttaattatttgaccatcattaaattagaccaaaggtgacatg |
469 |
Q |
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| T |
41911211 |
tgcatattattcgtttctaataaaaacatcagacgtaaactcattcacttctttcactttaattatttgaccatgattaaattagaccaaaggtgacata |
41911310 |
T |
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| Q |
470 |
cattataaaacaaatccatcatatcaatctaattaagtgcacattaattgatttaaagaaaaaaggtcatatatcttatcgaattcttttgaatattcaa |
569 |
Q |
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| T |
41911311 |
cattataaaacaaatctatcatatcaatctaattaagtgcacatttattgatttaaagaaaaaaggtcatatatcttatcgaattcttttcaatattcaa |
41911410 |
T |
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| Q |
570 |
aagataggttggagaaatttgatagtaaatccaaaagcga-tgtgttaatcctggcttaataatatagggatacacatatttgaacatgacgtag |
663 |
Q |
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| T |
41911411 |
aagataggttggagaaatatgatagtaaatccaaaagcgactgt-ttaatcttggcttaataatatagggatatacatatttgaacattacgtag |
41911504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 41911003 - 41911080
Alignment:
| Q |
170 |
gcgtaacatcaaagactaatcattttgaaataactcagatttatttaagagattaacatcaaaccctgaaccatcctt |
247 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
41911003 |
gcgtaacatcaaaaactaatcattttaaaataactcagatttatttaagagatttacatcaaaccctataccatcctt |
41911080 |
T |
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