View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_high_20 (Length: 438)
Name: NF1705_high_20
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_20 |
 | |
|
| [»] scaffold1207 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11196798 - 11196377
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196798 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
11196699 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11196698 |
aaggatactttcttccaatactacgaccaccattgagatagggagtttaaatcaaggtatagatttctactcatcgattagtcgcgcaaagtttgaggaa |
11196599 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196598 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
11196499 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196498 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
11196399 |
T |
|
| Q |
401 |
tggcgctgctgtccatgcttct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11196398 |
tggcgctgctgtccatgcttct |
11196377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11161212 - 11160791
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11161212 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaactctgcttgcgagaaagcaaa |
11161113 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11161112 |
aaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaaggaatagatttctactcatcgattagtcgcgcaaagtttgaggaa |
11161013 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161012 |
ctcaacaagaatcacttcgacaagtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
11160913 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11160912 |
gtggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcagtggcata |
11160813 |
T |
|
| Q |
401 |
tggcgctgctgtccatgcttct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11160812 |
tggcgctgctgtccatgcttct |
11160791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11156345 - 11155924
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156345 |
tgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
11156246 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
11156245 |
aaggatactttcttccaatattacaaccaccattcagatagagagtttaaatcaaggtatagatttctactcatcgattagtcgtgcaaagtttgaggaa |
11156146 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156145 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
11156046 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
400 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156045 |
gtggctctaccaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
11155946 |
T |
|
| Q |
401 |
tggcgctgctgtccatgcttct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11155945 |
tggcgctgctgtccatgcttct |
11155924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 11241515 - 11241937
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241515 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
11241614 |
T |
|
| Q |
101 |
a-aggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgagga |
199 |
Q |
| |
|
| |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11241615 |
aaaggatactttattccaatactacgaccaccattgagatagagagtttaaatcaaggtatagatttctactcatcgattagtcgcgcaaagtttgagga |
11241714 |
T |
|
| Q |
200 |
actcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgtt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241715 |
actcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgtt |
11241814 |
T |
|
| Q |
300 |
ggcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcat |
399 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11241815 |
ggtggctctattaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggctgtggcat |
11241914 |
T |
|
| Q |
400 |
atggcgctgctgtccatgcttct |
422 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
11241915 |
atggcgctgttgtccatgcttct |
11241937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 109 - 422
Target Start/End: Complemental strand, 11199680 - 11199367
Alignment:
| Q |
109 |
tttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaactcaacaa |
208 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11199680 |
tttcttccaatactacgaccaccattgagatagagagtttaaatcaaggtatagatttctactcatcgattagtcgcgcaaagtttgaggaactcaacaa |
11199581 |
T |
|
| Q |
209 |
gaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttggcggctct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11199580 |
gaatcacttcgacaagtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttggtggctct |
11199481 |
T |
|
| Q |
309 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11199480 |
actaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctg |
11199381 |
T |
|
| Q |
409 |
ctgtccatgcttct |
422 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11199380 |
ctgtccatgcttct |
11199367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11199963 - 11199708
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11199963 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggtagaagtctgcttgcgagaaagcaaa |
11199864 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11199863 |
aaggatactttcttccaatactacgaccaccattgagatagagagtttaaatcaaggtttagatttctactcatcgattagtcgcgcaaagtttgaggaa |
11199764 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattga |
256 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11199763 |
ctcaacaagaatgacttcgacaagtgcatggagattgtagaaaagtgtataattga |
11199708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 11133069 - 11132652
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||| || ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
11133069 |
tgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggagatcgaaaagcccttagacggttgaagtctgcatgtgagaaagcaaa |
11132970 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
||||||||||| |||||| |||| | |||||||||| |||| ||||||| |||||||||| |||| ||||||| || ||||||||||| ||| |
|
|
| T |
11132969 |
gaggatactttccagtaatactgagaccacaattgagatagaatgtttgcatcaagggatagatttcttctcaccgattagtcgagcaaagtttgaagaa |
11132870 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||| |||||||||| |||| ||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11132869 |
gtcaacaataatcacttcaacaagtgtatggagattgcggaaaagtgtctaatagatagcgggttggacaagagtagtattcatgatgttgtccttgttg |
11132770 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcata |
400 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||| ||||||||||||| | || ||| |||||||||||||| |||| ||||| || | |||| |
|
|
| T |
11132769 |
gcgggtctacgaggattgtaaaagtacaacaaatattgagtgatttctttgaaggaaaggagttatgcaaaagcataaatgcagatgaagctattgcatg |
11132670 |
T |
|
| Q |
401 |
tggcgctgctgtccatgc |
418 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
11132669 |
tggtgctgctgtccatgc |
11132652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 11209467 - 11209119
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| | ||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
11209467 |
tgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagagcaaa |
11209368 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||| |||||||| |||||| |||||| | ||| ||||||| || |||||||| || || |
|
|
| T |
11209367 |
aaggatactttctgtcaatactgcgactaacattgagatagattgtttaaatgaaggtaaagattttttgtcaacgattagtcgtgcaaagttcgacgat |
11209268 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||| || || ||| |||||||||||||||| |||||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||| |
|
|
| T |
11209267 |
ctcaacaagagtctttttgaccagtgcatggagattgtagaaaagtgtatagaagatagtgggatagtgaagagtaacattcatgatgttgtgcttgttg |
11209168 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaaatggtgagtgatttctt |
349 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
11209167 |
gcgggtctaccaggattgtaaaagtgcaacaacttttgattgatttctt |
11209119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 11276029 - 11275701
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |||||||| ||||| |||||||||||| || ||| |
|
|
| T |
11276029 |
tgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagagagtaaa |
11275930 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
||||||||||||| ||||| | ||| |||||||||||| ||||||| ||||||| |||||||| ||| | |||||| || |||||||| || || |
|
|
| T |
11275929 |
aaggatactttctgtcaatagtgagactaccattgagatagaatgtttaaaccaaggtacagatttctcctcgttgattagtcgtgcaaagttcgatgat |
11275830 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||| || || || |||||||||| ||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
11275829 |
ctcaacaagagtcttttttaccagtgcatggaaattgtagaaaagtgtatagcagatagtgggataaacaagagtaacattcatgatgttgtgcttgttg |
11275730 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaa |
329 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |
|
|
| T |
11275729 |
gcgggtctaccaggattgtaaaagtgcaa |
11275701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 11170645 - 11170314
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||| |
|
|
| T |
11170645 |
tgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagagagcaaa |
11170546 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
| | | |||||| ||||||| || ||| ||| ||||||| ||||| || ||||| |||||||| |||| |||||| || | || || || | |
|
|
| T |
11170545 |
atgtacactttcatccaataataagactgacatcgagatagattgtttatataaaggtgaagatttctcctcagtgattagtcgtggaattttcgacaat |
11170446 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||| |||| || || ||| ||||||||||| ||| |||||||||||| ||||||||||| | ||||||| |||||||||||||| ||||||| |
|
|
| T |
11170445 |
ctcagtaagagtctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaagagtaaaattcatgatgttgtgcttgttg |
11170346 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagtgcaacaa |
332 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
11170345 |
gcggctctaccaggattgtaaaagtgcaacaa |
11170314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 11314832 - 11315240
Alignment:
| Q |
7 |
attttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaaaaggat |
106 |
Q |
| |
|
|||||||| ||| |||| || || ||||||||| ||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
11314832 |
attttgtggaagtgttccggaagaggtataaaatagacattagtggagatttaacatcccttaggaggttgaagtcagcttgcgagaaagcaaaattgat |
11314931 |
T |
|
| Q |
107 |
actttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaactcaac |
206 |
Q |
| |
|
| | || | || | |||| |||||| |||| |||||| | |||| | || || | ||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
11314932 |
attgtcatataaatatgagaccaccattgtgataaaatctttaaaccgaggtgaaaatctcgaatcaaaaattagtcgcgcaaagtttgaagaactcaac |
11315031 |
T |
|
| Q |
207 |
aagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttggcggct |
306 |
Q |
| |
|
| ||||| || | ||||||||| ||||||| ||||||||| || ||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
11315032 |
gaacatcacatcaaaaagtgcatgaagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgcttgttggcggct |
11315131 |
T |
|
| Q |
307 |
ctactaggattgtaaaagtgcaacaaatggtgagtgatttcttcggggggaagcttttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgc |
406 |
Q |
| |
|
|||||||||||||||| |||| | | | |||| |||||| || | |||| ||||||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
11315132 |
ctactaggattgtaaagctgcatcgacgtttaagtggtttctttggtgagaagaaattatgcaaaagcatcaatgctgataaggcggttgcatatggcgc |
11315231 |
T |
|
| Q |
407 |
tgctgtcca |
415 |
Q |
| |
|
||||||||| |
|
|
| T |
11315232 |
tgctgtcca |
11315240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 11170268 - 11170211
Alignment:
| Q |
363 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgctt |
420 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11170268 |
ttatgtaaaaacatcaatgtagatgaggcggttgcatatggcgctgctgtccatgctt |
11170211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 11275652 - 11275595
Alignment:
| Q |
363 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgctt |
420 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
11275652 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatggcgctgctatccatgctt |
11275595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 11209090 - 11209033
Alignment:
| Q |
363 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatggcgctgctgtccatgctt |
420 |
Q |
| |
|
||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
11209090 |
ttatgtaaaagcatcaatgcagatgaggcagttgcatatggcgctgctgtccatgctt |
11209033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 11199712 - 11199676
Alignment:
| Q |
132 |
attgagatagggagtttaaatcaaggtatagatttct |
168 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11199712 |
attgagatagagagtttaaatcaaggtatagatttct |
11199676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 963 - 639
Alignment:
| Q |
1 |
tgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagcaaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||| | |||| |
|
|
| T |
963 |
tgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatccaagagccgttaggaggctgaagactgcttgtgagagatcaaa |
864 |
T |
|
| Q |
101 |
aaggatactttcttccaatactacgacccccattgagatagggagtttaaatcaaggtatagatttctactcatcgattaggcgcgcaaagtttgaggaa |
200 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||| | ||||||| ||||||| | |||||| ||| |||||||| || ||||||||||| || |
|
|
| T |
863 |
aaggatactttctgtcaatacttagactaccattgagatagagtgtttaaaccaaggtacaaatttctcctcgtcgattagtcgtgcaaagtttgatgat |
764 |
T |
|
| Q |
201 |
ctcaacaagaatcacttcgacaagtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttg |
300 |
Q |
| |
|
|||||||||| || || || |||||||||||| ||| ||||| |||||| ||||||||||| ||||||||| | ||||||||||||||||||||| |
|
|
| T |
763 |
ctcaacaagagtctttttaaccagtgcatggagagtgtagaaaactgtatagcagatagtgggataaacaagagtaactttcatgatgttgtccttgttg |
664 |
T |
|
| Q |
301 |
gcggctctactaggattgtaaaagt |
325 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
663 |
gcggctctacaaggattgtaaaagt |
639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 586 - 546
Alignment:
| Q |
363 |
ttatgcaaaagcatcaatgtcgatgaggcggtggcatatgg |
403 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
586 |
ttatgcaaaagcatcaatgcagatgaggcggttgcatatgg |
546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 17260094 - 17260000
Alignment:
| Q |
223 |
agtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgtccttgttggcggctctactaggatt |
317 |
Q |
| |
|
|||||||||||||||| || |||||| | | |||| || ||| |||||||| || ||| ||||||||||||||||||| || ||| |||||||| |
|
|
| T |
17260094 |
agtgcatggagattgttgagaagtgtcttagtgatggtaagattgacaagagcagaattgatgatgttgtccttgttggtggatcttctaggatt |
17260000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 27831230 - 27831284
Alignment:
| Q |
263 |
gatggacaagagtagcattcatgatgttgtccttgttggcggctctactaggatt |
317 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| |||||| | |||||| |
|
|
| T |
27831230 |
gatggacaagagtagtatagatgatgttgtccttgttggtggctcttcaaggatt |
27831284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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