View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_35 (Length: 379)
Name: NF1705_high_35
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 200 - 361
Target Start/End: Original strand, 29948935 - 29949100
Alignment:
| Q |
200 |
atattattacctagagtaatactagcaacactctctttttgaacactct-----acttatatttaaatcattgtgggtgggacatccccacaaagtgatg |
294 |
Q |
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| T |
29948935 |
atattattacctaaagtaatattaaaaacactctctttt-gaacactctctaatacttagatttaaatcattgtgggtgggacatcccaacaaagtggtg |
29949033 |
T |
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| Q |
295 |
ggatatcccgtcatccatctcaaccaccactcataccatgcagtcatgggcatccagtcatccactt |
361 |
Q |
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| T |
29949034 |
ggatatcccgtcatccatctcaaccatccctcataccatgcagtcatgggcatccagtcatccactt |
29949100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 9378701 - 9378737
Alignment:
| Q |
102 |
aacttaaaggactcaaatggaccaaaaattaattatg |
138 |
Q |
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| T |
9378701 |
aacttaaaggacttaaacggaccaaaaattaattatg |
9378737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 12095400 - 12095349
Alignment:
| Q |
102 |
aacttaaaggactcaaatggaccaaaaattaattatgggatcaaaacgatac |
153 |
Q |
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| T |
12095400 |
aacttaaaggacttaaacggaccaaaatttaattatgggaccaaagcgatac |
12095349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 21375216 - 21375268
Alignment:
| Q |
102 |
aacttaaaggactcaaatggaccaaaaattaattatgggatcaaaacgatacc |
154 |
Q |
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| T |
21375216 |
aacttaagagactcaaatggaccaaaagttaattataggaccaaaatgatacc |
21375268 |
T |
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