View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_39 (Length: 374)
Name: NF1705_high_39
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 5939538 - 5939187
Alignment:
| Q |
14 |
agctataacagttgggagtgtttatctccagaagggtttgcattaaattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggagg |
113 |
Q |
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| T |
5939538 |
agctataacagttgggagtgtttatctccagaagggtttgcattaaattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggagg |
5939439 |
T |
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| Q |
114 |
tgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaaacagaatcacaatgtctgctcctcttgtttattctgcaag |
213 |
Q |
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| T |
5939438 |
tgccaatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaaacagaatcacaatgtctgctcctcttgtttattctgcaag |
5939339 |
T |
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| Q |
214 |
acatattcaaatgaagccatcaatttacacacattaagatgtttctcttaaatttccaattccaggttcatttgcttttgattcccaattctacttcggc |
313 |
Q |
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| T |
5939338 |
acatattcaaatgaagccatcaatttacacacatgaagatgtttctcttaaatttccaattccaggttcatatgcttttgattcccaattcgactt---- |
5939243 |
T |
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| Q |
314 |
cggccatgttcggattgacttatttaagcttatccgctaacataaatattcttcga |
369 |
Q |
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| T |
5939242 |
cggccatgttcggattgacttatttaagcttatccgctaacataaacatttttcga |
5939187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 6894339 - 6894495
Alignment:
| Q |
17 |
tataacagttgggagtgtttatctccagaagggtttgcattaaattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggaggtgc |
116 |
Q |
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||||| |||||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| || | |
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| T |
6894339 |
tataaaagttgggaatgcttatcaccagatggatttgcattaaattccaaatggaatgaagcagagaagtatatatgcaatcctctttcaggggaagtac |
6894438 |
T |
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| Q |
117 |
caatggaatgtttatcagcaaaaactcttagtggaagatcattcagaaactcaacaa |
173 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
6894439 |
caatggaatgtttatctgcaaaaactcttagtggaagattatttcaaaactcaacaa |
6894495 |
T |
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