View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_43 (Length: 363)
Name: NF1705_high_43
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 50649646 - 50649316
Alignment:
| Q |
16 |
attctgatggtgcaacaatcacgggcaagtccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaattatgttgaggt |
115 |
Q |
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| T |
50649646 |
attctgatggtgcgacaatcacgggcaagtccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaattatgttgaggt |
50649547 |
T |
|
| Q |
116 |
tattggcattgctgaaagtaacaactctattcgtgctgaaatattgactgactttggtgccacatttggtatgaagcattattgtgtttatctatataat |
215 |
Q |
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| T |
50649546 |
tattggcattgctgaaagtaacaactctattcgtgctgaaatattgactgactttggtgccacatttggtatgaagcattattgtgtttatctatataat |
50649447 |
T |
|
| Q |
216 |
tttcttacctgttttcgttatggtagttttgttgatttgtgtttttgttctcgataaagtatattacttttaaattttgaaaaagaagaaaattgtcaca |
315 |
Q |
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| T |
50649446 |
tttcttacctgttttcgttatggtagttttgttgatttgtgtttttgttctcgataaagtatattacttttaaattttgaaaaagaagaaaattgtcaca |
50649347 |
T |
|
| Q |
316 |
tagtaaatgttgtttgtcaatcatcttgttt |
346 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
50649346 |
tagtaaatgttgtttgtcaatcattttgttt |
50649316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 50660058 - 50659729
Alignment:
| Q |
16 |
attctgatggtgcaacaatcacgggcaagtccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaattatgttgaggt |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50660058 |
attctgatggtgcgacaatcacgggcaagtccactgatgaatctcagataattgtaaaagggctatcatcacaagtccctgtcatgaattatgttgaggt |
50659959 |
T |
|
| Q |
116 |
tattggcattgctgaaagtaacaactctattcgtgctgaaatattgactgactttggtgccacatttggtatgaagcattattgtgtttatctatataat |
215 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| | |
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| T |
50659958 |
tattggcattgctgaaagtaacaactctatccatgctgaaatattgactgactttggtgccacatttggtaagaagcactattgtttttatctatatagt |
50659859 |
T |
|
| Q |
216 |
tttcttacctgttttcgttatggtagttttgttgatttgtgtttttgttctcgataaagtatattacttttaaattttgaaaaagaagaaaattgtcaca |
315 |
Q |
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|||||||| |||||| ||||||||||| ||||||| || |||||||||| || || || || |||| |||||||||||||||||||||| |||| || |
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| T |
50659858 |
tttcttacttgtttttgttatggtagtcttgttgaattctgtttttgttatcaattaattagggaacttctaaattttgaaaaagaagaaaactgtcgca |
50659759 |
T |
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| Q |
316 |
tagtaaatgttgtttgtcaatcatcttgtt |
345 |
Q |
| |
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|| |||||| ||||||||||||| ||||| |
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| T |
50659758 |
tattaaatggcgtttgtcaatcattttgtt |
50659729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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