View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_46 (Length: 353)

Name: NF1705_high_46
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_46
NF1705_high_46
[»] chr1 (22 HSPs)
chr1 (129-335)||(11892028-11892234)
chr1 (129-295)||(11905639-11905805)
chr1 (129-233)||(11882842-11882946)
chr1 (13-74)||(11891912-11891973)
chr1 (13-74)||(11905523-11905584)
chr1 (13-74)||(11882726-11882787)
chr1 (13-74)||(52818548-52818609)
chr1 (1-56)||(11880165-11880220)
chr1 (1-56)||(11902665-11902720)
chr1 (172-242)||(52818287-52818357)
chr1 (13-62)||(11882438-11882487)
chr1 (13-62)||(11891672-11891721)
chr1 (8-68)||(52818842-52818902)
chr1 (1-56)||(11880261-11880316)
chr1 (1-56)||(11902761-11902816)
chr1 (13-59)||(11882342-11882388)
chr1 (13-59)||(11891576-11891622)
chr1 (10-59)||(11905280-11905329)
chr1 (129-182)||(52818440-52818493)
chr1 (10-62)||(11882627-11882679)
chr1 (10-62)||(11891861-11891913)
chr1 (13-53)||(52819097-52819137)
[»] chr4 (1 HSPs)
chr4 (19-63)||(24482211-24482255)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 11892028 - 11892234
Alignment:
Q  129 accaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccacca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11892028 accaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccacca 11892127  T
Q  229 ccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattgttgcaatcataacacttgcatcttttcccac 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11892128 ccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattattgcaatcataacacttgcatcttttcccac 11892227  T
Q  329 ccataca 335  Q
    |||||||    
T  11892228 ccataca 11892234  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 129 - 295
Target Start/End: Original strand, 11905639 - 11905805
Alignment:
Q  129 accaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccacca 228  Q
    |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| | |||||||||||||||    
T  11905639 accaccgtctccatctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagtttacgtttatgcttctccacca 11905738  T
Q  229 ccaccaatctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccat 295  Q
    ||||| |||||| | ||  |||  ||||||||| |||||||| |||||||| |||||||||||||||    
T  11905739 ccacccatctaccattaatctcggaacaccaaagcaccattgatgataaatcatgtaagtttaccat 11905805  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 11882842 - 11882946
Alignment:
Q  129 accaccatcgccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccacca 228  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  11882842 accaccatcgccgtctcctccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaacttatatctatgcttcaccacca 11882941  T
Q  229 ccacc 233  Q
    |||||    
T  11882942 ccacc 11882946  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 11891912 - 11891973
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891912 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 11891973  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 11905523 - 11905584
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11905523 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 11905584  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 11882726 - 11882787
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11882726 tactattacaaatctcccccacctccatctccatctccaccacctccttaccactatcaaag 11882787  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 52818609 - 52818548
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaag 74  Q
    ||||||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||    
T  52818609 tactattacaagtcacctccacctccatctccatctccaccacctccttattactatcaaag 52818548  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11880165 - 11880220
Alignment:
Q  1 ccccatacaccctactattacaaatctcccccacctccatctccatctccaccacc 56  Q
    ||||||||||| ||||||||||||||||||||||| || || |||||||| |||||    
T  11880165 ccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccacc 11880220  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11902665 - 11902720
Alignment:
Q  1 ccccatacaccctactattacaaatctcccccacctccatctccatctccaccacc 56  Q
    ||||||||||| ||||||||||||||||||||||| || || |||||||| |||||    
T  11902665 ccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccacc 11902720  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 52818357 - 52818287
Alignment:
Q  172 cctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccaccaccaccaatctacaa 242  Q
    |||||||||||| | || |||||||| || |||| |||||| |||||||| ||||||||||| ||||||||    
T  52818357 cctcccccaccaatgaaatcacctcctccgccagtttacatttatgcttccccaccaccacctatctacaa 52818287  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11882438 - 11882487
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctcctta 62  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11882438 tactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11882487  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11891672 - 11891721
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctcctta 62  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  11891672 tactattacaaatctcctccaccaccatcaccatcaccaccacctcctta 11891721  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 52818902 - 52818842
Alignment:
Q  8 caccctactattacaaatctcccccacctccatctccatctccaccacctccttatcacta 68  Q
    |||| ||||||||| |||| || ||||| ||||| ||||||||||||||||||||| ||||    
T  52818902 caccgtactattaccaatcccctccaccaccatcaccatctccaccacctccttattacta 52818842  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11880261 - 11880316
Alignment:
Q  1 ccccatacaccctactattacaaatctcccccacctccatctccatctccaccacc 56  Q
    |||| |||||| ||||||||||||||||||||||| || || |||||||| |||||    
T  11880261 ccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccacc 11880316  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11902761 - 11902816
Alignment:
Q  1 ccccatacaccctactattacaaatctcccccacctccatctccatctccaccacc 56  Q
    |||| |||||| ||||||||||||||||||||||| || || |||||||| |||||    
T  11902761 ccccgtacaccttactattacaaatctcccccaccaccttcaccatctcctccacc 11902816  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 11882342 - 11882388
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctcc 59  Q
    ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11882342 tactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11882388  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 11891576 - 11891622
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccaccacctcc 59  Q
    ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11891576 tactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11891622  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11905280 - 11905329
Alignment:
Q  10 ccctactattacaaatctcccccacctccatctccatctccaccacctcc 59  Q
    ||||||||||||||||| || ||||| ||||| ||||| |||||||||||    
T  11905280 ccctactattacaaatcacctccaccaccatcgccatcaccaccacctcc 11905329  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 52818493 - 52818440
Alignment:
Q  129 accaccatcgccatctcctccacctccataccattacgtgagtcctcccccacc 182  Q
    ||||||| || | |||||||||||||| |||||||| |||||||| ||||||||    
T  52818493 accaccaacggcgtctcctccacctccttaccattatgtgagtccccccccacc 52818440  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 11882627 - 11882679
Alignment:
Q  10 ccctactattacaaatctcccccacctccatctccatctccaccacctcctta 62  Q
    ||||||||||||||||| || |||||||| || ||||| || |||||||||||    
T  11882627 ccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11882679  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 11891861 - 11891913
Alignment:
Q  10 ccctactattacaaatctcccccacctccatctccatctccaccacctcctta 62  Q
    ||||||||||||||||| || |||||||| || ||||| || |||||||||||    
T  11891861 ccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11891913  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 52819137 - 52819097
Alignment:
Q  13 tactattacaaatctcccccacctccatctccatctccacc 53  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  52819137 tactattacaaatctcccccaccgccatcaccatccccacc 52819097  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 24482255 - 24482211
Alignment:
Q  19 tacaaatctcccccacctccatctccatctccaccacctccttat 63  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttat 24482211  T

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