View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_high_57 (Length: 317)
Name: NF1705_high_57
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 6507598 - 6507888
Alignment:
| Q |
18 |
agaagaagaagaaggatatatgaaatttgttctagcattgctacctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507598 |
agaagaagaagaaggatatatgaaatttgttctagcattgctacctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatca |
6507697 |
T |
|
| Q |
118 |
aatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507698 |
aatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggtt |
6507797 |
T |
|
| Q |
218 |
cggcttgcttttttctgcctcttttttcgccacaaaccgacgtgtttcgttgaagtaaagataaatttatttggatttgattgtgatgatg |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6507798 |
ctgcttgcttttttctgcctcttttttcgccacaaaccgaagtgtttcgttgaagtaaagataaatttatttggatttgattgtgatgatg |
6507888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 61 - 250
Target Start/End: Complemental strand, 49385857 - 49385668
Alignment:
| Q |
61 |
cctttgatggaaagagcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaa |
160 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | |||||||||||||||||||| ||| ||||||| |
|
|
| T |
49385857 |
cctttcatggaaatagcagctctatcataagcaagagcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaa |
49385758 |
T |
|
| Q |
161 |
tttcagcagcatatctaccccaaggtcttctccttacaccaagaaacttacctggttcggcttgcttttttctgcctcttttttcgccac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| | ||| || |||| ||||||||||| |||| |
|
|
| T |
49385757 |
tttcagcagcatatctaccccaaggtcttctcctaacaccaagaaaccttcctggttctgattgtttccttcttcctcttttttcaccac |
49385668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 32557959 - 32558035
Alignment:
| Q |
79 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
155 |
Q |
| |
|
||||| || ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
32557959 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
32558035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 43848271 - 43848378
Alignment:
| Q |
97 |
gcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctaccccaaggtcttctcctta |
196 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||| ||||| || ||| | ||||||||||| |||||||| ||||| |||||| | || | |
|
|
| T |
43848271 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
43848370 |
T |
|
| Q |
197 |
caccaaga |
204 |
Q |
| |
|
|||||||| |
|
|
| T |
43848371 |
caccaaga |
43848378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 30656682 - 30656730
Alignment:
| Q |
84 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
132 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
30656682 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaa |
30656730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 30698624 - 30698672
Alignment:
| Q |
84 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
132 |
Q |
| |
|
||||||||| |||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
30698624 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa |
30698672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 30710507 - 30710555
Alignment:
| Q |
84 |
atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa |
132 |
Q |
| |
|
||||||||| |||||||| |||| |||| ||||||||||||||| |||| |
|
|
| T |
30710507 |
atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa |
30710555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 25986059 - 25986015
Alignment:
| Q |
75 |
agcagctctatcataagcaaaagcagcttcttgagcagtatcaaa |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
25986059 |
agcagctctatcataagccaaagcagcttcttcagcagtgtcaaa |
25986015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 2653519 - 2653574
Alignment:
| Q |
76 |
gcagctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaacca |
131 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||| |||||| |||| |||||||| |
|
|
| T |
2653519 |
gcagctctatcataaaccaaagcagcttcttcagcggtatcatatgtccctaacca |
2653574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University