View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_66 (Length: 294)
Name: NF1705_high_66
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 283
Target Start/End: Original strand, 36909915 - 36910167
Alignment:
| Q |
31 |
tatataagttgaggcaattataaaaatttggagattaaaacacnnnnnnncgtgttttaataatcaacatgtttttatatcatcaaattttgatattttt |
130 |
Q |
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| T |
36909915 |
tatataaattgaggcaattatgaaaatttggagattaaaacacaagaaaccgtgttttaataatcaacatgtttttatatcatcaaattttgatattttt |
36910014 |
T |
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| Q |
131 |
agcttcttaacgacagagacggttgactttaaaagagctcaaacagtcatgcattgttatgtctcatatattcataaatgttttgtttaagataattgat |
230 |
Q |
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| T |
36910015 |
agcttcttaacattagagacggttgactataaaagagcttaaagagtcatgcattgttatgtctcatatattcataaatgttgtgtttaagataattgat |
36910114 |
T |
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| Q |
231 |
tttgtcatttaaaagaggttagcctcacagttggatgtctgtttgtctttcat |
283 |
Q |
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| T |
36910115 |
tttgtcatttaaaagagattagcctcacagttggttgtctatttgtctttcat |
36910167 |
T |
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Back To:
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 18176874 - 18176831
Alignment:
| Q |
201 |
ttcataaatgttttgtttaagataattgattttgtcatttaaaa |
244 |
Q |
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| T |
18176874 |
ttcataaatgttgtgtttacgataattaattttgtcatttaaaa |
18176831 |
T |
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