View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_72 (Length: 283)
Name: NF1705_high_72
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 16298974 - 16299243
Alignment:
| Q |
5 |
cacttgcttttaatatacccatcaagctcatttcgtaggtcaattgagttttgctcctccaaatgttggtcgaaagcattggcccttgccatacccgaag |
104 |
Q |
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| T |
16298974 |
cacttgctgttaatatacccatcaagctcattctgtaggtcaattgagttttgctcctccaaatgttggtcaaaagcattggcccttgccatacccgaag |
16299073 |
T |
|
| Q |
105 |
ggcggcgggcggcaacagctgtattggtttcaacatgggtaattgtttctctaccactagcaagtggttgtgcattgttgacagtctggtcatgggcttt |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16299074 |
ggcggcgggcagcaacagctgtattggtttcaacatgggtaattgtttctctacaactcgcaagtggttgtgcattgttgacagtctggtcatgagcttt |
16299173 |
T |
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| Q |
205 |
cttataccaaaagtacagtttatctagatactccctaatagatttaaccaactctttggcaaacacaggt |
274 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16299174 |
cttataccaaaagtacaatttatctagattctccctaatagatttaaccaactctttggcaaacacaggt |
16299243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 22896471 - 22896740
Alignment:
| Q |
5 |
cacttgcttttaatatacccatcaagctcatttcgtaggtcaattgagttttgctcctccaaatgttggtcgaaagcattggcccttgccatacccgaag |
104 |
Q |
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| T |
22896471 |
cacttgctgttaatatacccatcaagctcattctgtaggtcaattgagttttgctcctccaaatgttggtcaaaagcattggcccttgccatatccgaag |
22896570 |
T |
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| Q |
105 |
ggcggcgggcggcaacagctgtattggtttcaacatgggtaattgtttctctaccactagcaagtggttgtgcattgttgacagtctggtcatgggcttt |
204 |
Q |
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| T |
22896571 |
ggcggcgggcggcaacagttgtattggtttcaacatgggtaattgtttctctaccactagcaagtggttgtgcattgttgatagtcgggtcatgggcttt |
22896670 |
T |
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| Q |
205 |
cttataccaaaagtacagtttatctagatactccctaatagatttaaccaactctttggcaaacacaggt |
274 |
Q |
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| T |
22896671 |
cttataccaaaagtacaatttatctagattctccctaatagatttaaccaactctttggcaaacacaggt |
22896740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 15977215 - 15977476
Alignment:
| Q |
8 |
ttgcttttaatatacccatcaagctcatttcgtaggtcaattgagttttgctcctccaaatgttggtcgaaagcattggcccttgccatacccgaagggc |
107 |
Q |
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| T |
15977215 |
ttgctattaatatacccatcaagctcattatgtaaataaattgagttttgctactataaatgttggtgaaaatcattggcccttgccatacgtgaag--- |
15977311 |
T |
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| Q |
108 |
ggcgggcggcaacagctgtattggtttcaacatgggtaattgtttctctaccactagcaagtggttgtgcattgttgacagtctggtcatgggctttctt |
207 |
Q |
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|||| || || ||||| |||||||||| | |||| || |||||| ||||||||||||||||||| ||| ||||||| | |||||||||| ||| | |
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| T |
15977312 |
ggcgagcaacataagctgcattggtttcatcgtgggaaacattttctccaccactagcaagtggttgtccatagttgacaatttggtcatgggtttttct |
15977411 |
T |
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| Q |
208 |
ataccaaaagtacagtttatctagatactccctaatagatttaaccaactctttggcaaacacag |
272 |
Q |
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||||||| | || ||||| | || | ||||||||||| || ||| |||||||||||||||| |
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| T |
15977412 |
ataccaacaataaagtttttttatactctccctaatagtaccaagcaattctttggcaaacacag |
15977476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 14428293 - 14428093
Alignment:
| Q |
14 |
ttaatatacccatcaagctcatttcgtaggtcaattgagttttgctcctccaaatgttggtcgaaagcattggcccttgccatacccgaagggcggcggg |
113 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||| |||| | | |
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| T |
14428293 |
ttaatatacccatcaagctcgttttgtaggtcaattgagttttgctcctccaaatattggtaaaaagaattggcccttgccatacgcgaatggcgacttg |
14428194 |
T |
|
| Q |
114 |
cggcaacagctgtattggtttcaacatgggtaattgtttctctaccactagcaagtggttgtgcattgttgacagtctggtcatgggctttcttatacca |
213 |
Q |
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| T |
14428193 |
cagcagcagctttattggtttcaacatgggtaacattttctccacgaataacaagtggttgtccattgttgacagtttggtcatgggttttcttatacca |
14428094 |
T |
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| Q |
214 |
a |
214 |
Q |
| |
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| T |
14428093 |
a |
14428093 |
T |
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