View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_86 (Length: 256)
Name: NF1705_high_86
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_86 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 46626977 - 46626872
Alignment:
| Q |
74 |
tccaagtgaatgcaattaatttcacacaatcaaaataccagatgtgtatatcacaagtcacaactaatggtacatttttcgtaaaaagataaataaataa |
173 |
Q |
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| T |
46626977 |
tccaagtcaatgcaattaatttcacacaatcaaaatacgagatgtgtatatcacaattcacaactaatggtgcattttacgtaaaaagataaataaataa |
46626878 |
T |
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| Q |
174 |
taaaac |
179 |
Q |
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|||||| |
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| T |
46626877 |
taaaac |
46626872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 187
Target Start/End: Complemental strand, 46640993 - 46640902
Alignment:
| Q |
95 |
tcacacaatcaaaataccagatgtgtatatcacaagtcacaactaatggtacatttttcgtaaaaagataaataaataataaaactaatgata |
187 |
Q |
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| T |
46640993 |
tcacgcaatcaaaataccagatgtgtatatcacaagtcacaactaatggtaca-ttttcgtaaaaagataaataaataataaaactaatgata |
46640902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 46640874 - 46640846
Alignment:
| Q |
223 |
aacatacataaataatcaaggtatataat |
251 |
Q |
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| T |
46640874 |
aacatacataaataatcaaggtatataat |
46640846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 18380197 - 18380251
Alignment:
| Q |
66 |
taccgatatccaagtgaatgcaattaatttcacacaatcaaaataccagatgtgt |
120 |
Q |
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| T |
18380197 |
taccaatatccaagtcaatgcaattaatttcacacaatcaaaataccagatgtgt |
18380251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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