View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_high_88 (Length: 253)
Name: NF1705_high_88
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 42518701 - 42518908
Alignment:
| Q |
1 |
gattagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgc |
100 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518701 |
gattagtaaactacctaaataataaatcagttgaactatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgc |
42518800 |
T |
|
| Q |
101 |
acacaacttaatttcgtgacatattttattttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttatgcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42518801 |
acacaacttaatttcgtgacatattttattttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttatggta |
42518900 |
T |
|
| Q |
201 |
tccttgca |
208 |
Q |
| |
|
|||||||| |
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| T |
42518901 |
tccttgca |
42518908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 1240379 - 1240525
Alignment:
| Q |
2 |
attagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgca |
101 |
Q |
| |
|
||||||||||||| |||||||||||| |||| || |||| |||||| ||| |||||||||||||||||| | | ||| |||| ||||||||||| ||| |
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| T |
1240379 |
attagtaaactacttaaataataaataagttgaactataaataacagtataagtaattaacatttgtcacaca--caaaaagtacttaacaatttatgca |
1240476 |
T |
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| Q |
102 |
cacaacttaatttcgtgacatattttattttaaacagtaaagtagtacc |
150 |
Q |
| |
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|||| |||||| || ||| ||||||||||| || ||||||||||||||| |
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|
| T |
1240477 |
cacagcttaatatcatgagatattttatttcaatcagtaaagtagtacc |
1240525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 41972011 - 41972157
Alignment:
| Q |
2 |
attagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaatttacgca |
101 |
Q |
| |
|
||||||||||||| |||||||||||| |||| || ||| |||||| ||| |||||||||||||||||| | | ||| |||| ||||||||||| ||| |
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| T |
41972011 |
attagtaaactacttaaataataaataagttgaactattaataacagtataagtaattaacatttgtcacaca--caaaaagtacttaacaatttatgca |
41972108 |
T |
|
| Q |
102 |
cacaacttaatttcgtgacatattttattttaaacagtaaagtagtacc |
150 |
Q |
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||||||||||| || ||| ||||||||||| || ||||||||||||||| |
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|
| T |
41972109 |
cacaacttaatatcatgagatattttatttcaatcagtaaagtagtacc |
41972157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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