View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_high_96 (Length: 245)

Name: NF1705_high_96
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_high_96
NF1705_high_96
[»] chr2 (2 HSPs)
chr2 (92-220)||(29276815-29276942)
chr2 (1-64)||(29276664-29276727)
[»] chr4 (2 HSPs)
chr4 (92-220)||(55857651-55857778)
chr4 (1-64)||(55857866-55857929)
[»] chr1 (2 HSPs)
chr1 (131-217)||(16701887-16701973)
chr1 (184-219)||(46266933-46266968)
[»] scaffold0175 (2 HSPs)
scaffold0175 (18-64)||(27528-27574)
scaffold0175 (188-220)||(27415-27447)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 29276815 - 29276942
Alignment:
Q  92 tttcactttctctttatgtgagtaatttggtttgttggcttgtgtgtttttgttaagtggacagtgcacatgatttgcgcagtacaagattgcattgcat 191  Q
    ||||||||| |||||||||||||||||||||||||||| || |||||||||   |||| |||| ||||||||||||||||||||||||||||||||||||    
T  29276815 tttcactttttctttatgtgagtaatttggtttgttggttt-tgtgtttttaacaagtagacaatgcacatgatttgcgcagtacaagattgcattgcat 29276913  T
Q  192 atgatagtagttatgagatgaaagtgcaa 220  Q
    |||||||||||||||||||||||||||||    
T  29276914 atgatagtagttatgagatgaaagtgcaa 29276942  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29276664 - 29276727
Alignment:
Q  1 tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 64  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  29276664 tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 29276727  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 55857778 - 55857651
Alignment:
Q  92 tttcactttctctttatgtgagtaatttggtttgttggcttgtgtgtttttgttaagtggacagtgcacatgatttgcgcagtacaagattgcattgcat 191  Q
    |||||||||  ||||||||||||||||||||||||||| || ||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||    
T  55857778 tttcacttttcctttatgtgagtaatttggtttgttggttt-tgtgtttttattaagtagccaatgcacatgatttgcgcagtacaagattgcattgcat 55857680  T
Q  192 atgatagtagttatgagatgaaagtgcaa 220  Q
    |||||| ||||||||||||||||||||||    
T  55857679 atgataatagttatgagatgaaagtgcaa 55857651  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 55857929 - 55857866
Alignment:
Q  1 tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa 64  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  55857929 tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa 55857866  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 16701887 - 16701973
Alignment:
Q  131 ttgtgtgtttttgttaagtggacagtgcacatgatttgcgcagtacaagattgcattgcatatgatagtagttatgagatgaaagtg 217  Q
    ||||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16701887 ttgtgtgtttttgttaagtaggcagtgcatatgatctgcgcagtacaagattgcattgcacatgatagtagttatgagatgaaagtg 16701973  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 46266968 - 46266933
Alignment:
Q  184 cattgcatatgatagtagttatgagatgaaagtgca 219  Q
    ||||||||||||||||||||||||||||||||||||    
T  46266968 cattgcatatgatagtagttatgagatgaaagtgca 46266933  T

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Target: scaffold0175 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27574 - 27528
Alignment:
Q  18 taagctaagatcataattacctaaatgtctcatatacttaccgctaa 64  Q
    |||| ||||||||||| ||||||||||||||| |||||||| |||||    
T  27574 taaggtaagatcataactacctaaatgtctcaaatacttactgctaa 27528  T

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Target: scaffold0175; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 27447 - 27415
Alignment:
Q  188 gcatatgatagtagttatgagatgaaagtgcaa 220  Q
    ||||||||||||| |||||||||||||||||||    
T  27447 gcatatgatagtatttatgagatgaaagtgcaa 27415  T

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