View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_101 (Length: 248)
Name: NF1705_low_101
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_101 |
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| [»] scaffold0592 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43446603 - 43446839
Alignment:
| Q |
1 |
agttcttacctttcactcaactctgtgagttcatggaacttttaaggtttttaaagagtcgtgttccaatcttaccttcctcgcaactccctcaacatgc |
100 |
Q |
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| T |
43446603 |
agttcttacctttcactcaactctgtgagttcatggaactttcaaggtttttaaagagtcgtgttccaatcttaccttcctggcaactccctcaacatgc |
43446702 |
T |
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| Q |
101 |
gagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattttgtacaa |
200 |
Q |
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| T |
43446703 |
gagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattttgtacaa |
43446802 |
T |
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| Q |
201 |
atggtacttccataaaactcatcaatgacattttcat |
237 |
Q |
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| T |
43446803 |
atggtacttccataaaactcatcaatggcattttcat |
43446839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 43446354 - 43446501
Alignment:
| Q |
47 |
gtttttaaagagtcgtgttccaa-tcttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcagg |
145 |
Q |
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| T |
43446354 |
gtttttaaagagtcgtgtttcaggtcttaccttccttgcaacaccttcaacatgcaagttcatggaacattttgaggtttttaaagacccatgttttaga |
43446453 |
T |
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| Q |
146 |
tcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
193 |
Q |
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| T |
43446454 |
acttaccttcctcgcaactcccctaacatgcgagttcatggaacattt |
43446501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 43446410 - 43446577
Alignment:
| Q |
28 |
agttcatggaac-ttttaaggtttttaaagagtcgtgttcca-atcttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggttt |
125 |
Q |
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| T |
43446410 |
agttcatggaacattttgaggtttttaaagacccatgttttagaacttaccttcctcgcaactcccctaacatgcgagttcatggaacatttcaaggttt |
43446509 |
T |
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| Q |
126 |
ttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
193 |
Q |
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| T |
43446510 |
ttaaagagtcacatttcaggtagtgtcttcctcgcagctcccttaagaggagatttcatggaacattt |
43446577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 43446307 - 43446427
Alignment:
| Q |
75 |
ccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatctt-aaca |
173 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| | |||||||||||| | | ||||||||||||||||||| ||||| | ||| |||| |
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| T |
43446307 |
ccttcctcgcaactttttcaacatgcgagttcatggaatatttcgatgtttttaaagagtcgtgtttcaggtcttaccttccttgcaac-accttcaaca |
43446405 |
T |
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| Q |
174 |
tgcgagttcatggaacattttg |
195 |
Q |
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||| |||||||||||||||||| |
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| T |
43446406 |
tgcaagttcatggaacattttg |
43446427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 43446536 - 43446614
Alignment:
| Q |
76 |
cttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttacctt |
154 |
Q |
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| T |
43446536 |
cttcctcgcagctcccttaagaggagatttcatggaacatttcaaggtttttaaagagccatgtttcagttcttacctt |
43446614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 43446271 - 43446349
Alignment:
| Q |
115 |
tttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
193 |
Q |
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| T |
43446271 |
tttcacggattttaaaaagtcatgttgcaggacttgccttcctcgcaactttttcaacatgcgagttcatggaatattt |
43446349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: scaffold0592
Description:
Target: scaffold0592; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 3251 - 3159
Alignment:
| Q |
71 |
cttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
164 |
Q |
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| T |
3251 |
cttacctttctcgcaactcctttaacaagtgagtttgtggaacttt-caaggattttaaagagccatgtttcagaacataccttcctcgcaact |
3159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 3082 - 3008
Alignment:
| Q |
89 |
ccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
164 |
Q |
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| T |
3082 |
cccttaacatgcgagttcatggaactttt-gaggtttttaaaatgtcatgtttcaagacttaccttcctcgcaact |
3008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 3070 - 3004
Alignment:
| Q |
27 |
gagttcatggaacttttaaggtttttaaagagtcgtgttccaa-tcttaccttcctcgcaactccct |
92 |
Q |
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| T |
3070 |
gagttcatggaacttttgaggtttttaaaatgtcatgtttcaagacttaccttcctcgcaactccct |
3004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 3283 - 3234
Alignment:
| Q |
115 |
tttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
164 |
Q |
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| T |
3283 |
tttcagggtttttaaagagccatgtttcaggacttacctttctcgcaact |
3234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 3401 - 3310
Alignment:
| Q |
73 |
taccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttca-ggtcttaccttcctcgcaact |
164 |
Q |
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| T |
3401 |
taccttcctcacaactcctttaccagacgagttcatggaac-tttcgaagtttttaaagagccatgttacagggacttaccttcctctcaact |
3310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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