View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_102 (Length: 248)
Name: NF1705_low_102
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_102 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 32468230 - 32468115
Alignment:
| Q |
124 |
cataggaagtgaactcacatttctcaaaacaacactacacaactatgctcataaaaaa-cccatcaacttccttgaatgatactccattctcattatttt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32468230 |
cataggaagtgaactcacatttctcaaaacaacactacacaactatgctcataaaaaaacccatcaacttccttgaatgatactccattctcattatttt |
32468131 |
T |
|
| Q |
223 |
cacctcataacctttg |
238 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32468130 |
cacctcataacctttg |
32468115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 32468335 - 32468297
Alignment:
| Q |
19 |
ttaacatgatttcaagtataaatagcaacaaagatatac |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32468335 |
ttaacatgatttcaagtataaatagcaacaaagatatac |
32468297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University