View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_103 (Length: 246)

Name: NF1705_low_103
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_103
NF1705_low_103
[»] chr8 (4 HSPs)
chr8 (18-246)||(43446043-43446267)
chr8 (79-171)||(35063691-35063781)
chr8 (106-162)||(1098786-1098842)
chr8 (90-172)||(34422835-34422919)
[»] chr5 (3 HSPs)
chr5 (48-228)||(10161273-10161446)
chr5 (117-169)||(23245201-23245253)
chr5 (48-171)||(26916844-26916965)
[»] chr4 (6 HSPs)
chr4 (66-172)||(38380264-38380368)
chr4 (80-197)||(2321803-2321918)
chr4 (93-157)||(9132088-9132150)
chr4 (85-172)||(19655510-19655595)
chr4 (52-171)||(33632793-33632910)
chr4 (117-172)||(12701832-12701887)
[»] chr3 (8 HSPs)
chr3 (66-172)||(16973033-16973137)
chr3 (105-172)||(55048226-55048293)
chr3 (117-171)||(22176299-22176353)
chr3 (119-205)||(49002918-49003004)
chr3 (120-171)||(34145659-34145710)
chr3 (117-172)||(42605710-42605765)
chr3 (117-171)||(22101355-22101409)
chr3 (117-171)||(38076749-38076803)
[»] chr7 (3 HSPs)
chr7 (65-172)||(32651911-32652016)
chr7 (85-169)||(1470865-1470948)
chr7 (113-171)||(21708253-21708311)
[»] chr1 (7 HSPs)
chr1 (113-172)||(38595459-38595518)
chr1 (49-162)||(5851682-5851794)
chr1 (117-172)||(23926102-23926157)
chr1 (110-172)||(34900132-34900194)
chr1 (79-168)||(43810884-43810970)
chr1 (79-151)||(5609936-5610006)
chr1 (48-128)||(52652804-52652882)
[»] chr2 (1 HSPs)
chr2 (85-172)||(32006501-32006586)
[»] scaffold0031 (1 HSPs)
scaffold0031 (120-236)||(78657-78768)
[»] chr6 (1 HSPs)
chr6 (114-165)||(29252843-29252894)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 43446043 - 43446267
Alignment:
Q  18 tttacatcacctttctggcatactttttaagaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatt 117  Q
    |||||||| |||||||||||||||||||| |||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |    
T  43446043 tttacatcccctttctggcatactttttaggaaaatgttaactagtatcccggggcacaagttaagtaaacaaaatatagtataagtgtatcttggaact 43446142  T
Q  118 tgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagtt 217  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| |||||||||     ||||||||||    
T  43446143 tgtgtactcaaaatttaaaaagtgtgaaaaatgatgtttttaatataaatatttctttttttgtttccttaactagtgcctcggg-----ggcactagtt 43446237  T
Q  218 aacaagaccctac-ttttttaatggaacat 246  Q
    ||||||||||||| ||||||||||||||||    
T  43446238 aacaagaccctactttttttaatggaacat 43446267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 35063691 - 35063781
Alignment:
Q  79 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    ||||| |||| |||||||||||||||  | ||| ||| ||||||||||||||||| |||||||| || || |||||||| |||| ||||||||    
T  35063691 ttaaggaaaccaaatatagtataagt--accttggaacttgtgtagtcaaagtttcaaaagtgtaaagaaagatgttttcaatgcaaatattt 35063781  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 1098842 - 1098786
Alignment:
Q  106 tatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatg 162  Q
    ||||||||||||| ||||||||||||||||||||||| |||||  ||||||| ||||    
T  1098842 tatcttagaatttatgtagtcaaagtttaaaaagtgtaaaaaaatatgttttcaatg 1098786  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 34422835 - 34422919
Alignment:
Q  90 aaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagt----gtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||||||||||||||||  | | ||| ||||||||||||||||||||||||    |  |||||||||||||| |||| |||||||||    
T  34422835 aaatatagtataagtgt--catggaacttgtgtagtcaaagtttaaaaagtgaaagaaaaaaatgatgttttcaatgcaaatatttc 34422919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 10161446 - 10161273
Alignment:
Q  48 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 147  Q
    ||||||||||||||||| ||| || ||| | ||||| |||| |||||||||||||||  | ||| ||| ||||||| |||||||||||||||||| ||||    
T  10161446 gaaaatgttaactagcgccccagggcactagttaaggaaaccaaatatagtataagt--accttggaacttgtgtaatcaaagtttaaaaagtgtaaaaa 10161349  T
Q  148 atgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagttaacaagaccct 228  Q
    |||||||||| |||| |||||||||       ||||||||||||| |||| ||     ||||||||||||||||| |||||    
T  10161348 atgatgttttcaatgcaaatatttccttttttgtttccttaactagtgccccg-----gaggcactagttaacaacaccct 10161273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 23245253 - 23245201
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatat 169  Q
    |||||||||||||| ||||||||||| || ||||||||||| |||| ||||||    
T  23245253 ttgtgtagtcaaagattaaaaagtgtaaagaatgatgttttcaatgcaaatat 23245201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 26916965 - 26916844
Alignment:
Q  48 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 147  Q
    ||||||||||||||| |||| |||||||   | ||| |||| ||||||| |||||||  |  ||  || ||||||||| ||| |||||||||||| ||||    
T  26916965 gaaaatgttaactagtgtcctgggacactcgtcaaggaaaccaaatataatataagt--actttgaaacttgtgtagtaaaaatttaaaaagtgtaaaaa 26916868  T
Q  148 atgatgtttttaatgtaaatattt 171  Q
    ||||| |||| |||| ||||||||    
T  26916867 atgattttttcaatgcaaatattt 26916844  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 38380264 - 38380368
Alignment:
Q  66 cccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 165  Q
    |||||||||| | ||||| |||| |||||||||||||||  |  || ||||||||||||||||| | |||||||||| || ||| |||||||||||||||    
T  38380264 cccgggacactagttaaggaaaccaaatatagtataagt--actttggaatttgtgtagtcaaaatataaaaagtgtaaagaataatgtttttaatgtaa 38380361  T
Q  166 atatttc 172  Q
    |||||||    
T  38380362 atatttc 38380368  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 2321803 - 2321918
Alignment:
Q  80 taagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnn 179  Q
    |||| |||| |||||||||||||||  ||||| ||| |||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||           
T  2321803 taagaaaactaaatatagtataagt--atcttggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaaatatttcttctttt 2321900  T
Q  180 gtttccttaactaatgcc 197  Q
    ||||||||||||||||||    
T  2321901 gtttccttaactaatgcc 2321918  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 9132088 - 9132150
Alignment:
Q  93 tatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttt 157  Q
    ||||||||||||  |||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  9132088 tatagtataagt--atcttgaaatttgtgtagtcaaagtttaaaaagtgtaaaaaatgatgtttt 9132150  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 19655595 - 19655510
Alignment:
Q  85 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||| ||||||| |||||||||  |||  || |||||||||||||||||||||||||| || ||| |||||||||||  |||||||||    
T  19655595 aaaccaaatataatataagtgt--cttgaaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgtttttaatacaaatatttc 19655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 33632793 - 33632910
Alignment:
Q  52 atgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatga 151  Q
    ||||||||||| ||||||||  ||   ||||| |||| |||||||||||||||  | |||  |||||||| |||||||||||||||||||| || |||||    
T  33632793 atgttaactagtgtcccggggaactggttaaggaaaccaaatatagtataagt--accttgaaatttgtgcagtcaaagtttaaaaagtgtaaagaatga 33632890  T
Q  152 tgtttttaatgtaaatattt 171  Q
    | |||| |||  ||||||||    
T  33632891 tattttcaatacaaatattt 33632910  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 12701887 - 12701832
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||| ||||||||||||||||||||| || ||||||||||| |||| |||||||||    
T  12701887 ttgtatagtcaaagtttaaaaagtgtaaagaatgatgttttcaatgcaaatatttc 12701832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 16973137 - 16973033
Alignment:
Q  66 cccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 165  Q
    |||||||||| | ||||| |||| |||||||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||| ||||||| |||  ||    
T  16973137 cccgggacactagttaaggaaaccaaatatagtataagt--atcttggaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgttttcaatacaa 16973040  T
Q  166 atatttc 172  Q
    |||||||    
T  16973039 atatttc 16973033  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 55048226 - 55048293
Alignment:
Q  105 gtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    ||||||| ||||||||||||||||||||| |||||| | |||| | ||||||| |||| |||||||||    
T  55048226 gtatcttggaatttgtgtagtcaaagttttaaaagtataaaaattaatgttttcaatgcaaatatttc 55048293  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 22176299 - 22176353
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    |||||||||||||||||||||||| | || ||||||||||| |||| ||||||||    
T  22176299 ttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaaatattt 22176353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 49002918 - 49003004
Alignment:
Q  119 gtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagc 205  Q
    ||||||| ||| |||||||||||| || |||||||||||||||| |||| ||||       ||||||||||||| ||| ||||||||    
T  49002918 gtgtagttaaaatttaaaaagtgtaaataatgatgtttttaatgcaaatgtttctttttatgtttccttaactagtgcttcgggagc 49003004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 34145710 - 34145659
Alignment:
Q  120 tgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    |||| |||||||||||||||||| |||||||||||||| |||  ||||||||    
T  34145710 tgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaatacaaatattt 34145659  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 42605765 - 42605710
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    ||||||||| |||||||||||||||| |||||| || ||||| ||| |||||||||    
T  42605765 ttgtgtagttaaagtttaaaaagtgtaaaaaataatattttttatgcaaatatttc 42605710  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 22101355 - 22101409
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    |||||||||||||||||||||||| | || ||||||| ||| |||| ||||||||    
T  22101355 ttgtgtagtcaaagtttaaaaagtataaagaatgatgctttcaatgcaaatattt 22101409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 38076749 - 38076803
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    ||||||||| ||| |||||||||||| |||||||||||||| |||  ||||||||    
T  38076749 ttgtgtagttaaaatttaaaaagtgtaaaaaatgatgttttcaatacaaatattt 38076803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 32652016 - 32651911
Alignment:
Q  65 tcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgta 164  Q
    |||||||||||   ||||| |||| |||||||||||||||||  |||  || |||||||||||||||||||||||| | || ||||||||||| |||| |    
T  32652016 tcccgggacaccggttaaggaaaccaaatatagtataagtgt--cttgaaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgca 32651919  T
Q  165 aatatttc 172  Q
    ||||||||    
T  32651918 aatatttc 32651911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 1470865 - 1470948
Alignment:
Q  85 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaa-gtgtgaaaaatgatgtttttaatgtaaatat 169  Q
    |||| ||||||||||| |||||  ||||||| ||||||||||||| |||||||| |||| |||||||||||||| |||||||||||    
T  1470865 aaactaaatatagtatgagtgt--cttagaacttgtgtagtcaaaatttaaaaaagtgtaaaaaatgatgttttcaatgtaaatat 1470948  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 21708311 - 21708253
Alignment:
Q  113 gaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatattt 171  Q
    |||||||| || ||||||||||| |||||| || ||||||||||| |||||||||||||    
T  21708311 gaatttgtataatcaaagtttaagaagtgtaaagaatgatgttttcaatgtaaatattt 21708253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 38595459 - 38595518
Alignment:
Q  113 gaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||    
T  38595459 gaatttgtatagtcaaagtttaaaaagtgtaaataatgatgtttttaatgcaaatatttc 38595518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 5851682 - 5851794
Alignment:
Q  49 aaaatgttaactagcgtcccggga-cacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaa 147  Q
    |||||||||||||| ||||| | | ||| ||||||| |||  |||||||||||||||  || |||||| ||||| |||||||||||||||| ||  || |    
T  5851682 aaaatgttaactagtgtccccgtaacactaattaaggaaatcaaatatagtataagt--attttagaacttgtgcagtcaaagtttaaaaaatgaaaaga 5851779  T
Q  148 atgatgtttttaatg 162  Q
    |||||||||| ||||    
T  5851780 atgatgttttcaatg 5851794  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 23926102 - 23926157
Alignment:
Q  117 ttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||||||||||||||||||||||||| || |||||| |||| |||| |||||||||    
T  23926102 ttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttc 23926157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 34900194 - 34900132
Alignment:
Q  110 ttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||||| |||||||||||||||||||||||| | || ||||||||| | |||| |||||||||    
T  34900194 ttagaacttgtgtagtcaaagtttaaaaagtataaagaatgatgttctcaatgcaaatatttc 34900132  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 43810970 - 43810884
Alignment:
Q  79 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaata 168  Q
    ||||| |||| ||||||||||| |||  |||||| || |||||||||||||||||||||| ||| | ||| |||||||| |||| |||||    
T  43810970 ttaagaaaaccaaatatagtatgagt--atcttaaaacttgtgtagtcaaagtttaaaaaatgt-ataaaagatgttttcaatgcaaata 43810884  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 5610006 - 5609936
Alignment:
Q  79 ttaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatga 151  Q
    ||||| |||| |||||||||||||||| ||  || || ||||||||| |||||||||||||||| || |||||    
T  5610006 ttaagaaaaccaaatatagtataagtgcat--taaaacttgtgtagttaaagtttaaaaagtgtaaagaatga 5609936  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 52652804 - 52652882
Alignment:
Q  48 gaaaatgttaactagcgtcccgggacacaaattaagtaaacaaaatatagtataagtgtatcttagaatttgtgtagtcaa 128  Q
    ||||||||||||||| | |||||| ||| | ||||| |||| |||||||||| ||  ||||||| ||| ||||||||||||    
T  52652804 gaaaatgttaactagtgccccggggcactagttaaggaaaccaaatatagtacaa--gtatcttggaacttgtgtagtcaa 52652882  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 32006586 - 32006501
Alignment:
Q  85 aaacaaaatatagtataagtgtatcttagaatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttc 172  Q
    |||| |||||||||||||||  | |||| || |||||||||||||||||||||||||| || |||||| |||| |||| |||||||||    
T  32006586 aaaccaaatatagtataagt--accttataacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaaatatttc 32006501  T

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Target: scaffold0031 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 78657 - 78768
Alignment:
Q  120 tgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaaatatttcnnnnnnngtttccttaactaatgcctcgggagcgaggcactagttaa 219  Q
    |||||||||||||||||||||||  | |||||||||||||||| |||||||||       ||||||||||||| |||| ||     |||||||||||||     
T  78657 tgtagtcaaagtttaaaaagtgtatagaatgatgtttttaatgcaaatatttccttttttgtttccttaactagtgccccg-----gaggcactagttac 78751  T
Q  220 caagaccctactttttt 236  Q
    |||||| ||| ||||||    
T  78752 caagactctattttttt 78768  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 29252894 - 29252843
Alignment:
Q  114 aatttgtgtagtcaaagtttaaaaagtgtgaaaaatgatgtttttaatgtaa 165  Q
    |||||||||||||||||| | |||||||| |||||||||||| | |||||||    
T  29252894 aatttgtgtagtcaaagtcttaaaagtgtaaaaaatgatgttgtcaatgtaa 29252843  T

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