View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_109 (Length: 238)
Name: NF1705_low_109
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 23882851 - 23883053
Alignment:
| Q |
18 |
atggacggttaactaatagcagtttgcaggacatgcatctcagaactgcgtactgtcatcactgaatagatactatcgaaaggatattgcatgttcttcg |
117 |
Q |
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| T |
23882851 |
atggacggttaactaatagcagtttgcaggacatgcatctcagaactgcgtactgtcatcacttaatagatactatcgaaaggatattgcatgttcttcg |
23882950 |
T |
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| Q |
118 |
cgattgtcccatagcaatggttgtttgcttaggactgttaattttagatatcacaaggaacttttcaacgcagatttgcagcaatggttggatatgagta |
217 |
Q |
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| T |
23882951 |
cgattatcccatagcaatggttgtttgcttaggactgttaattttagatatcacaaggaacttttcaacgcagatttgcagcaatggttggatatgagta |
23883050 |
T |
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| Q |
218 |
tgg |
220 |
Q |
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||| |
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| T |
23883051 |
tgg |
23883053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 23420437 - 23420245
Alignment:
| Q |
21 |
gacggttaactaatagcagtttgcaggacatgcatctcagaactgcgtactgtcatcactgaatagatactatcgaaaggatattgcatgttcttcgcga |
120 |
Q |
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| T |
23420437 |
gacggttaagtaatagcagattgcaagtcatgcatctcagaactgcatac-------actgaatagatactatcgaaacgacattgcatgttcttcgcga |
23420345 |
T |
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| Q |
121 |
ttgtcccatagcaatggttgtttgcttaggactgttaattttagatatcacaaggaacttttcaacgcagatttgcagcaatggttggatatgagtatgg |
220 |
Q |
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| T |
23420344 |
ttgtcccatatcaatggttgtttgcttaagaccgttaattctagatatcataaggaacttttcaacgcagatttgcagcaatggttggagatgagtatgg |
23420245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 23876608 - 23876677
Alignment:
| Q |
69 |
actgtcatcactgaatagatactatcgaaaggatattgcatgttcttcgcgattgtcccatagcaatggt |
138 |
Q |
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||||||| ||||| ||||| |||||| ||| || ||||||||||||||||| ||||| | |||||||||| |
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| T |
23876608 |
actgtcaccactgtatagaaactatcaaaacgacattgcatgttcttcgcggttgtctcttagcaatggt |
23876677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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