View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_11 (Length: 541)
Name: NF1705_low_11
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 10102293 - 10102543
Alignment:
| Q |
17 |
aacattcacttaattaataatactgaatcatatagatatcctttt-ttcttaggctctttgcattgttccattttagtctagtatttacatgacattcat |
115 |
Q |
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| T |
10102293 |
aacattcacttaattaata---ctgaatcatatagatatcctttttttcttaggctctttgcattgttcctttttagtctagtatttacatgacattcat |
10102389 |
T |
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| Q |
116 |
ttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaacttcactggggtcttcca |
215 |
Q |
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| T |
10102390 |
ttctcttttgacatgtaggtttatgattttgtgaaattgaaaaatatttactatgctggaagccatggaatggacatatcaacttcactggggtcttcca |
10102489 |
T |
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| Q |
216 |
agtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
269 |
Q |
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| T |
10102490 |
agtatcatgataagaatcatcaaacaaagggtgttgatgaaaaggtttacaagc |
10102543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 394 - 536
Target Start/End: Original strand, 10102969 - 10103111
Alignment:
| Q |
394 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaactatccaagaggtaatattattcattaatt |
493 |
Q |
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| T |
10102969 |
ttaacgtctcataatgtattttagggtaatgaagttgtactttatcatccagcagaagaatttttaccaacaatccaagaggtaatattattcattaatt |
10103068 |
T |
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| Q |
494 |
tgttcttaaaatgaacaaacttctttatgtaccctttgcttct |
536 |
Q |
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| T |
10103069 |
tgttcttaaaatgaacaaacttctttatgtaccctttggttct |
10103111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 10102598 - 10102663
Alignment:
| Q |
325 |
atgaaattcacatttctcttattatcagaacaatcttgtttgagacatacataacaataaggataa |
390 |
Q |
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| T |
10102598 |
atgaaattcacatttctcttattatcataacaatcttgtttgagacatacataacaataagaataa |
10102663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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