View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_111 (Length: 238)
Name: NF1705_low_111
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_111 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 39079006 - 39079221
Alignment:
| Q |
7 |
ggtgttactagtttctatcattcaattgtaatcggcaaggaaaccgctcattgtatgtatcgagaagaaagtcnnnnnnnggttaagatttgttggccac |
106 |
Q |
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| T |
39079006 |
ggtgttactagtttctatcattcaattgtaatcggcaaggaaaccactcattgtatgtatcgagaagaaagtctttttttggttaagatttgttggccac |
39079105 |
T |
|
| Q |
107 |
tcgaagattcattatatcaatagttagatttccttctatataattttcatgtttcatcctctcttaatcaagccaccataaccccatcctaaattctttg |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39079106 |
tcgaagatttattatatcaatagttagatttccttctatataattttcatgtttcatcctctcttaatcaagccaccataaccccatcctaaattctttg |
39079205 |
T |
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| Q |
207 |
tcatcgtcggtagcca |
222 |
Q |
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|||||||||||||||| |
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| T |
39079206 |
tcatcgtcggtagcca |
39079221 |
T |
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