View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_112 (Length: 237)
Name: NF1705_low_112
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_112 |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 46341767 - 46341987
Alignment:
| Q |
1 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46341767 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
46341866 |
T |
|
| Q |
101 |
tgagattttattggaaagcaatttttagtcatgtgtttgcacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46341867 |
tgagattttattggaaagcaatttttagtcatgtgtttgcacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttcc |
46341966 |
T |
|
| Q |
201 |
attctgattaattagggaaag |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
46341967 |
attctgattaattagggaaag |
46341987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 6562807 - 6562620
Alignment:
| Q |
34 |
cttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttttgagattttattggaaagcaatttttagtcatg |
133 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6562807 |
cttccaatacgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttttgagattttattggaaagcaatttttagtcatc |
6562708 |
T |
|
| Q |
134 |
tgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttccattctgattaattagggaaag |
221 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||| ||| | ||||||| |||| |||||||||| ||||||||||||||| |
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| T |
6562707 |
tgtttgccacaacaatttaattctcgatataaaagaaacacgaaaagcaaaaattccattta-tttccattcttattaattagggaaag |
6562620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34545641 - 34545420
Alignment:
| Q |
1 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34545641 |
tttctcttcaaaccaccatgaatggttcttcatcttccattatgccgacaattttttctctttccaacaatttattttggctgagatctattttggcttt |
34545542 |
T |
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| Q |
101 |
tgagattttattggaaagcaatttttagtcatgtgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| ||| ||||||| | ||||||||| |
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| T |
34545541 |
tgagattttattggaaagcaatttttagtcatctgtttgccacaacaacttaattctcgatataaaagaaacacgaaaagcagaaatttcatttattttc |
34545442 |
T |
|
| Q |
200 |
cattctgattaattagggaaag |
221 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
34545441 |
cattctgattaattagggaaag |
34545420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30838769 - 30838990
Alignment:
| Q |
1 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
30838769 |
tttctcttcaaaccaccatgaatgtttcttcatcttccaatatgccgacaacttcttctctttccagcaacttattttggctgaggtcaattttggcttt |
30838868 |
T |
|
| Q |
101 |
tgagattttattggaaagcaatttttagtcatgtgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttc |
199 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| ||| ||||||| | ||||||||| |
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| T |
30838869 |
tgagattttattggaaagcaatttttagtcatctgtttgccacaacaacttaattctcgatataaaagaaacacgaaaagcagaaatttcatttattttc |
30838968 |
T |
|
| Q |
200 |
cattctgattaattagggaaag |
221 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30838969 |
cattctgattaattagggaaag |
30838990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32383159 - 32382943
Alignment:
| Q |
1 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32383159 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgag-----ttttggcttt |
32383065 |
T |
|
| Q |
101 |
tgagattttattggaaagcaatttttagtcatgtgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
32383064 |
tgagattttattggaaagcaatttttagtcatctgtttgccacaacaacttaattctcgatataaaagaaacacgaaaagcagaaattctatttattttc |
32382965 |
T |
|
| Q |
200 |
cattctgattaattagggaaag |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
32382964 |
tattctgattaattagggaaag |
32382943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32437114 - 32436898
Alignment:
| Q |
1 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32437114 |
tttctcttcaaaccaccatgaatggttcttcatcttccaatatgccgacaacttcttctctttccaacaacttattttggctgag-----ttttggcttt |
32437020 |
T |
|
| Q |
101 |
tgagattttattggaaagcaatttttagtcatgtgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
32437019 |
tgagattttattggaaagcaatttttagtcatctgtttgccacaacaacttaattctcgatataaaagaaacacgaaaagcagaaattctatttattttc |
32436920 |
T |
|
| Q |
200 |
cattctgattaattagggaaag |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
32436919 |
tattctgattaattagggaaag |
32436898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 17997 - 17810
Alignment:
| Q |
34 |
cttccaatatgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttttgagattttattggaaagcaatttttagtcatg |
133 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17997 |
cttccaatacgccgacaacttcttctctttccaacaacttattttggctgagatctattttggcttttgagattttattggaaagcaatttttagtcatc |
17898 |
T |
|
| Q |
134 |
tgtttg-cacaacaatttaatcctcgatataaaagaaacacgataagaagaaattccgtttattttccattctgattaattagggaaag |
221 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||| ||| | ||||||| |||| |||||||||| ||||||||||||||| |
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|
| T |
17897 |
tgtttgccacaacaatttaattctcgatataaaagaaacacgaaaagcaaaaattccattta-tttccattcttattaattagggaaag |
17810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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