View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_114 (Length: 237)
Name: NF1705_low_114
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_114 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27513916 - 27514136
Alignment:
| Q |
1 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttgggtaccaatggtttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27513916 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttggataccaatggtttta |
27514015 |
T |
|
| Q |
101 |
aaagcattcatggcatcttcatgcatttcaataagaacattttgcaactcatcataagatggttttagtctaagttttcgatcactaacctcaattgatt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27514016 |
aaagcattcatggcatcttcatgcatttcaacaagaatattttgcaactcatcataagatggttttagtttaagttttcgatcactaacctcaattgatt |
27514115 |
T |
|
| Q |
201 |
tctttcaaaatcccatgaagc |
221 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
27514116 |
tctttcttcatcccatgaagc |
27514136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14985782 - 14985943
Alignment:
| Q |
1 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttgggtaccaatggtttta |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||| | |||| | |||||||| ||||| |||||||| |||||| ||||||| | || |||||| |
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| T |
14985782 |
agatgcatgttcacttttgaaattttcgaaatctttcttaatttttgcaatttcggtctccaaattgagaattgttctcttttgggttctgattgtttta |
14985881 |
T |
|
| Q |
101 |
aaagcattcatggcatcttcatgcatttcaataagaacattttgcaactcatcataagatgg |
162 |
Q |
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|||| |||||||||||| |||| ||||| | ||||||||||| ||||||||||| ||||| |
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| T |
14985882 |
aaagttttcatggcatctccatgaatttctactagaacattttgtaactcatcataggatgg |
14985943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 15415393 - 15415554
Alignment:
| Q |
1 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttgggtaccaatggtttta |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||| | |||| | |||||||| ||||| |||||||| |||||| ||||||| | || |||||| |
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| T |
15415393 |
agatgcatgttcacttttgaaattttcgaaatctttcttaatttttgcaatttcggtctccaaattgagaattgttctcttttgggttctgattgtttta |
15415492 |
T |
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| Q |
101 |
aaagcattcatggcatcttcatgcatttcaataagaacattttgcaactcatcataagatgg |
162 |
Q |
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|||| |||||||||||| |||| ||||| | ||||||||||| ||||||||||| ||||| |
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| T |
15415493 |
aaagttttcatggcatctccatgaatttctactagaacattttgtaactcatcataggatgg |
15415554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 19766948 - 19766743
Alignment:
| Q |
1 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttgggtaccaatggtttta |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || |||| | |||||||||||||||||||||||| ||||| ||||||| | || || ||| |
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| T |
19766948 |
agatgcatgttcgtttttgaagttttcaaaatctttcctaattttttcaatttcggcttccaatttgagaatgattctcttttgggttctgatagtatta |
19766849 |
T |
|
| Q |
101 |
aaagcattcatggcatcttcatgcatttcaataagaacattttgcaactcatcataagatggttttagtctaagttttcgatcactaacctcaattgatt |
200 |
Q |
| |
|
||||||||||| ||||| |||||||||| | ||||||||||| || |||||||| ||||| || ||| || ||||| ||||||||||||||||||| |
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| T |
19766848 |
aaagcattcattacatctccatgcatttctactagaacattttgtaaatcatcatatgatggattaagtttagagtttcggtcactaacctcaattgatt |
19766749 |
T |
|
| Q |
201 |
tctttc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
19766748 |
tctttc |
19766743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 25179904 - 25179824
Alignment:
| Q |
49 |
aatttcggcttccaatttgagaatagttctcctttgggtaccaatggttttaaaagcattcatggcatcttcatgcatttc |
129 |
Q |
| |
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||||| ||| |||||||||||||| |||||| ||||||| || || |||||| |||| |||||||||||| |||||||||| |
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| T |
25179904 |
aattttggcctccaatttgagaatcgttctcttttgggtgccgattgttttagaagctttcatggcatctccatgcatttc |
25179824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 13530353 - 13530511
Alignment:
| Q |
1 |
agatgcatgttcatttttgaagttttcaaaatcttttctcatttgtataatttcggcttccaatttgagaatagttctcctttgggtaccaatggtttta |
100 |
Q |
| |
|
||||||||| || |||||||| ||||||||| ||| | |||| | | |||| | ||| |||||||| ||||||||| |||||| |||||| ||||| |
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| T |
13530353 |
agatgcatgctcctttttgaaaagttcaaaatcctttttaattttcaaagtttcagattctaatttgaggatagttctcttttgggaaccaatcttttta |
13530452 |
T |
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| Q |
101 |
aaagcattcatggcatcttcatgcatttcaataagaacattttgcaactcatcataaga |
159 |
Q |
| |
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|| |||||||| | |||| |||||||||| || ||| |||||| || ||||||||||| |
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| T |
13530453 |
aaggcattcatagaatctccatgcatttctatgagagcattttcaaattcatcataaga |
13530511 |
T |
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