View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_117 (Length: 236)
Name: NF1705_low_117
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1108745 - 1108535
Alignment:
| Q |
1 |
ctaaattcctttaaatctgaatcaactaattaagaacttaatctaattaatcaagtcctccttgatacgtaacgcaaattgatcaacacaagaaaacaat |
100 |
Q |
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| T |
1108745 |
ctaaattcctttaaatctgaatcaactaattaagaacttaatctaattaatcatgtcctccttgatacgtaacgcaaattgatcaacacaagaaaacaat |
1108646 |
T |
|
| Q |
101 |
tttaatgctatatcatacttttcttcatcccttaagcatatacttttcgccataattttgtctcagtctagatcatacaaaccaaattagaaaccaaata |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1108645 |
tttaatgctatatcataattttcttcatcccttaagcatatacttttcgccataattttgtctcagtctagatcatacaaaccaaattagaaaccaaata |
1108546 |
T |
|
| Q |
201 |
agagttagagc |
211 |
Q |
| |
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||||||||||| |
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| T |
1108545 |
agagttagagc |
1108535 |
T |
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