View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_12 (Length: 500)

Name: NF1705_low_12
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_12
NF1705_low_12
[»] chr8 (15 HSPs)
chr8 (19-482)||(15964748-15965211)
chr8 (136-476)||(19150378-19150730)
chr8 (133-402)||(15983478-15983747)
chr8 (130-476)||(15953315-15953673)
chr8 (136-475)||(16004814-16005165)
chr8 (131-401)||(19185696-19185969)
chr8 (17-113)||(15953816-15953912)
chr8 (419-483)||(15979500-15979564)
chr8 (23-115)||(15983246-15983338)
chr8 (23-115)||(16005325-16005416)
chr8 (23-115)||(19150207-19150299)
chr8 (425-483)||(19126345-19126403)
chr8 (415-476)||(15983772-15983833)
chr8 (131-206)||(19126187-19126265)
chr8 (233-273)||(15979428-15979468)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Original strand, 15964748 - 15965211
Alignment:
Q  19 gcgtaagagtcccaattccagtataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttaatgaattacttgttcaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15964748 gcgtaagagtcccaattccaatataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttagtgaattacttgttcaa 15964847  T
Q  119 atacaataattgtagttagagatataaatacctttgtgatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctt 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15964848 atacaataattgtagttagagatataaatacctttgggatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctt 15964947  T
Q  219 tacttgataccaagaagacacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttat 318  Q
     | ||||||||||||||| |||||||||||||||| |||| || | | ||||||||| ||||||||||||| ||||||| ||||||  ||| ||| ||||    
T  15964948 cagttgataccaagaagagacaaccagttccattaccataaaagtttctgaatccaaaacagctgcagttactccagcatatttcttcgcagtcatttat 15965047  T
Q  319 gccataattagtatttgctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcctgcacacttcattccag 418  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||     
T  15965048 gccataattagtatttgctatatcgtataccatattttcattaacgtaaactaacttgctatcaaacatatcaccaggattcctgcacagttcattccac 15965147  T
Q  419 ttttggcaccctccattagtattgtacccattacacaaatcagcccttgctatgtcacttcctt 482  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||    
T  15965148 ttttggcaccctccattagtattgaacccattgcacaaatctgcccttgctatgtcacgtcctt 15965211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 136 - 476
Target Start/End: Original strand, 19150378 - 19150730
Alignment:
Q  136 agagatataaatacctttgtgatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctttacttgataccaagaag 235  Q
    |||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  19150378 agagttatacatacctttgtgatcggtgttcttaaccagaatgtaaaataactcataaccactgcttgcaatgttaagaccttcagttgataccaagaag 19150477  T
Q  236 acacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttatgccataattagtatttg 335  Q
    |||||||||||||||||  ||||  | |  |||||||||| |||||||||||||  ||||||||||||| ||||||||||||||||  || ||| ||||     
T  19150478 acacaaccagttccatttccatagtagttattgaatccaaaacagctgcagttaccccagcacatttcttggcaatcacttatgcctaaactagcatttt 19150577  T
Q  336 ctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcctgca--ca----------cttcattccagttttg 423  Q
     |||||  ||||| ||||| ||||||  |||||| |||||| | ||||||||||||||||||||||||||  ||          |||||  ||| |||||    
T  19150578 ttatattgtatactatattgtcattactgtaaacgggcttgttctcaaacttatcaccaggattcctgcaagcaggtatcttggcttcaccccatttttg 19150677  T
Q  424 gcaccctccattagtattgtacccattacacaaatcagcccttgctatgtcac 476  Q
    ||||||||| ||||| || ||||||||||||| ||||||||||||||||||||    
T  19150678 gcaccctccgttagtgttatacccattacacatatcagcccttgctatgtcac 19150730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 133 - 402
Target Start/End: Original strand, 15983478 - 15983747
Alignment:
Q  133 gttagagatataaatacctttgtgatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctttacttgataccaag 232  Q
    ||||||| |||| |||||||||||||||| |||||||| || ||||| |||  | |||| |||||||||||||| ||||||||||| | ||||| |||||    
T  15983478 gttagagttatacatacctttgtgatcggcgttcttaatcaaaatgtaaaagtagtcatcaccactgcttgcaacgttaagaccttcagttgattccaag 15983577  T
Q  233 aagacacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttatgccataattagtat 332  Q
    |||||||| ||||||||||| |||||||| | ||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||| ||    
T  15983578 aagacacagccagttccattctcatacaagtatttgaatccaaaacagctgcagttactccaacacatttcttggcaatcacttatgccataactagcat 15983677  T
Q  333 ttgctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcct 402  Q
    || ||||||  | ||| ||||| |||||| |||||||||||||| | |||||||||||||||||||||||    
T  15983678 tttctatattgtttacgatattgtcattaccgtaaactggcttgttgtcaaacttatcaccaggattcct 15983747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 130 - 476
Target Start/End: Complemental strand, 15953673 - 15953315
Alignment:
Q  130 gtagttagagatataaatacctttgtgatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctttacttgatacc 229  Q
    |||||||||| |||| |||||||||||||| | |||||||| || ||||| ||| |  || | |||||||||||||||||||||||||| | ||||||||    
T  15953673 gtagttagagttatacatacctttgtgatcagcgttcttaatcaaaatgtaaaagacgtcgtcaccactgcttgcaatgttaagaccttcagttgatacc 15953574  T
Q  230 aagaagacacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttatgccataattag 329  Q
    |||||||||||||||||||||||  ||||  | |  |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |||    
T  15953573 aagaagacacaaccagttccatttccatagtagttattgaatccaaaacagctgcagttagtccagcacatttcttggcaatcacttatgccataactag 15953474  T
Q  330 tatttgctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcctgca--ca----------cttcattcca 417  Q
     |||| ||||||  | ||| ||||| ||||||  ||||||  ||||| ||||||||||||||||||||||||||||  ||          |||||  |||    
T  15953473 cattttctatattgtttacgatattgtcattactgtaaacgtgcttgttatcaaacttatcaccaggattcctgcaagcaggtatcttggcttcacccca 15953374  T
Q  418 gttttggcaccctccattagtattgtacccattacacaaatcagcccttgctatgtcac 476  Q
     |||||||||||||| ||||| || ||||||| ||||| ||||||||||||||||||||    
T  15953373 tttttggcaccctccgttagtgttatacccataacacatatcagcccttgctatgtcac 15953315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 136 - 475
Target Start/End: Complemental strand, 16005165 - 16004814
Alignment:
Q  136 agagatataaatacctttgtgatcggtgttcttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctttacttgataccaagaag 235  Q
    ||||||||| |||||||||||| | ||||||||| ||||||||| |||| | ||| ||||| ||| ||||  ||||| ||| ||||||||||||||||      
T  16005165 agagatatacatacctttgtgaccagtgttcttatccagaatgtaaaatgagtcaaaaccaatgcctgcagcgttaaaaccattacttgataccaagatt 16005066  T
Q  236 acacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttatgccataattagtatttg 335  Q
    ||||||||||||| ||||||||| ||   |||||||||||  |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| ||||     
T  16005065 acacaaccagttcgattatcataaaaaggtttgaatccaaagcagctgcagttactccagcacatatcttggcaatcacttatgccataactagcatttt 16004966  T
Q  336 ctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcctgca------------cacttcattccagttttg 423  Q
    ||||||  |||| ||||| || ||||  | |  ||  ||||||||||||| |||||||||||||||||||            ||| |||  ||| |||||    
T  16004965 ctatattgtataacatatctttattactgaatcctaacttgctatcaaacatatcaccaggattcctgcaagcaggtatctccacatcacgccacttttg 16004866  T
Q  424 gcaccctccattagtattgtacccattacacaaatcagcccttgctatgtca 475  Q
    ||||||||||||||| || ||||||| ||| | |||||| ||||||||||||    
T  16004865 gcaccctccattagtgttatacccataacatatatcagctcttgctatgtca 16004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 401
Target Start/End: Complemental strand, 19185969 - 19185696
Alignment:
Q  131 tagttagagatataaatacctttgtgatcggtgtt---cttaaccagaatgttaaataactcataaccactgcttgcaatgttaagacctttacttgata 227  Q
    ||||||| |||||| ||||||||||||||||||||   |||||| ||||||| | |    | || |||||| | ||| ||||||||||||| | ||||||    
T  19185969 tagttagggatatacatacctttgtgatcggtgttgttcttaacaagaatgtaatacttgtaatcaccactccctgcgatgttaagaccttcagttgata 19185870  T
Q  228 ccaagaagacacaaccagttccattatcatacaattctttgaatccaatacagctgcagttattccagcacatttctcggcaatcacttatgccataatt 327  Q
    ||||||  ||||||||||||||||||  ||| || | |  ||||||||  ||||||||||||  ||| ||||| ||| |||||||||||||||||||  |    
T  19185869 ccaagattacacaaccagttccattactatataagtttccgaatccaaagcagctgcagttacgccaacacatatcttggcaatcacttatgccatagct 19185770  T
Q  328 agtatttgctatatcatataccatattttcattaacgtaaactggcttgctatcaaacttatcaccaggattcc 401  Q
    || ||||   ||||  ||| | || |||||||||  |||||||  |||||||||||||||||||||||||||||    
T  19185769 agaatttagaatatggtattcaattttttcattagggtaaactatcttgctatcaaacttatcaccaggattcc 19185696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 15953912 - 15953816
Alignment:
Q  17 tagcgtaagagtcccaattccagtataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttaatgaattacttg 113  Q
    |||| |||||||||| |||||||   |||||||||||| ||||||  |||||| |||||| |||||||||||||||||||||| || ||||||||||    
T  15953912 tagcataagagtccccattccagcgcaaatccatatccccttgttaaatactataacaagaaactgatttgagttatatatttcaacgaattacttg 15953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 419 - 483
Target Start/End: Original strand, 15979500 - 15979564
Alignment:
Q  419 ttttggcaccctccattagtattgtacccattacacaaatcagcccttgctatgtcacttccttt 483  Q
    ||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  15979500 ttttgacaccctccattagtgttatacccataacacaaatcagcccttgctatgtcacttccttt 15979564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 15983246 - 15983338
Alignment:
Q  23 aagagtcccaattccagtataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttaatgaattacttgtt 115  Q
    ||||||||| |||||||   |||||||||||| |||||   |||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  15983246 aagagtccccattccagcgcaaatccatatccacttgtcaaatactataacaaggaactgatttgagttatatatttcaacgaattacttgtt 15983338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 16005416 - 16005325
Alignment:
Q  23 aagagtcccaattccagtataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttaatgaattacttgtt 115  Q
    ||||||||| | ||||||  ||||| ||| || |||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  16005416 aagagtccccaatccagtgcaaatcaatagccacttgttcgatactaaaacaaggaactgatttgagtt-tctatttcaatgaattacttgtt 16005325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 19150207 - 19150299
Alignment:
Q  23 aagagtcccaattccagtataaatccatatcctcttgttcgatactaaaacaaggaactgatttgagttatatattttaatgaattacttgtt 115  Q
    ||||||||| |||||||   ||||||||||||  ||||| | ||||||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  19150207 aagagtccccattccagcgcaaatccatatccagttgttggttactaaaacaaggaaatgatttgagttatatatttcaatggattacttgtt 19150299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 483
Target Start/End: Original strand, 19126345 - 19126403
Alignment:
Q  425 caccctccattagtattgtacccattacacaaatcagcccttgctatgtcacttccttt 483  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||    
T  19126345 caccctccattagtgttatacccataacacaaatcagcccttgctatgttacttccttt 19126403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 476
Target Start/End: Original strand, 15983772 - 15983833
Alignment:
Q  415 ccagttttggcaccctccattagtattgtacccattacacaaatcagcccttgctatgtcac 476  Q
    ||| |||||||||||||| ||||| || ||||||| ||||| ||| ||||||||||||||||    
T  15983772 ccatttttggcaccctccgttagtgttatacccataacacatatctgcccttgctatgtcac 15983833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 19126187 - 19126265
Alignment:
Q  131 tagttagagatataaatacctttgtgatc---ggtgttcttaaccagaatgttaaataactcataaccactgcttgcaa 206  Q
    |||||||||||||| ||||||||||||||   |||||||||||  ||||||| |||||| | || |||||| |||||||    
T  19126187 tagttagagatatacatacctttgtgatcggtggtgttcttaattagaatgtaaaataagtaatcaccacttcttgcaa 19126265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 15979428 - 15979468
Alignment:
Q  233 aagacacaaccagttccattatcatacaattctttgaatcc 273  Q
    ||||||||||||||||| ||||||||||| | |||||||||    
T  15979428 aagacacaaccagttccgttatcatacaagtttttgaatcc 15979468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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