View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_120 (Length: 231)
Name: NF1705_low_120
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 41876176 - 41876380
Alignment:
| Q |
15 |
acctataagtggtttgttctcatttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaa |
114 |
Q |
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| T |
41876176 |
acctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaa |
41876275 |
T |
|
| Q |
115 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41876276 |
tgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctga |
41876375 |
T |
|
| Q |
215 |
tgatg |
219 |
Q |
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||||| |
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| T |
41876376 |
tgatg |
41876380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 24817669 - 24817467
Alignment:
| Q |
19 |
ataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatg |
116 |
Q |
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| T |
24817669 |
ataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatg |
24817570 |
T |
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| Q |
117 |
aaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatg |
216 |
Q |
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| T |
24817569 |
atacttgcaggcggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatg |
24817470 |
T |
|
| Q |
217 |
atg |
219 |
Q |
| |
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||| |
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| T |
24817469 |
atg |
24817467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 24800593 - 24800391
Alignment:
| Q |
19 |
ataagtggtttgttctca--tttttattttaatccatcaaccaaatgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatg |
116 |
Q |
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||||||||||||||||| |||||| | ||||||||| | |||||||| | ||||| |||| | |||||||||||||| |||||||| |||||||| |
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| T |
24800593 |
ataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatg |
24800494 |
T |
|
| Q |
117 |
aaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagttgatg |
216 |
Q |
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| T |
24800493 |
atacttgcaggtggcggtatgatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatg |
24800394 |
T |
|
| Q |
217 |
atg |
219 |
Q |
| |
|
||| |
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|
| T |
24800393 |
atg |
24800391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 40867886 - 40867697
Alignment:
| Q |
19 |
ataagtggtttgttctcatttttattttaatccatcaaccaaa-tgttttaaaattttcataaattttagtatcctcttctcgattttccaacaaaatga |
117 |
Q |
| |
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|||||||||||||| | |||| || | || |||||| ||||| ||||| ||||||| ||| ||||| |||||| ||||| |||||||||||||| ||| |
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| T |
40867886 |
ataagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaacaaa-tga |
40867788 |
T |
|
| Q |
118 |
aaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaagg |
208 |
Q |
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||| || ||| |||||| || ||| ||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| |
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| T |
40867787 |
aaactgcaggaggtggtttgatatcaggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaagg |
40867697 |
T |
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